Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC1.64□□□□□ -2.15
USF3Q68DE3 AC103988.1-201ENST00000566382 2177 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.64□□□□□ -2.15
USF3Q68DE3 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC1.64□□□□□ -2.15
USF3Q68DE3 MTND4LP13-201ENST00000425022 298 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 AC003989.2-201ENST00000440224 169 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.64□□□□□ -2.15
USF3Q68DE3 AC011753.1-201ENST00000451001 220 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 FABP5P13-201ENST00000452144 328 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 MTCO1P42-201ENST00000457379 726 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC1.64□□□□□ -2.15
USF3Q68DE3 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC1.64□□□□□ -2.15
USF3Q68DE3 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC1.64□□□□□ -2.15
USF3Q68DE3 AC108078.2-201ENST00000510750 236 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 RN7SKP34-201ENST00000516142 244 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 REXO2-218ENST00000544827 880 ntTSL 3 BASIC1.64□□□□□ -2.15
USF3Q68DE3 AC011611.5-201ENST00000552477 578 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC1.64□□□□□ -2.15
USF3Q68DE3 AL356280.1-201ENST00000603614 379 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 AC091834.1-201ENST00000614543 472 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC1.64□□□□□ -2.15
USF3Q68DE3 DCAF13P1-201ENST00000495256 1330 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
USF3Q68DE3 AC022336.2-201ENST00000568966 2538 ntBASIC1.63□□□□□ -2.15
USF3Q68DE3 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC1.63□□□□□ -2.15
USF3Q68DE3 RNU2-17P-201ENST00000410290 190 ntBASIC1.63□□□□□ -2.15
USF3Q68DE3 HMGB3P2-201ENST00000411913 584 ntBASIC1.63□□□□□ -2.15
USF3Q68DE3 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC1.63□□□□□ -2.15
USF3Q68DE3 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC1.63□□□□□ -2.15
USF3Q68DE3 SNORD13-201ENST00000459299 104 ntBASIC1.63□□□□□ -2.15
USF3Q68DE3 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC1.63□□□□□ -2.15
USF3Q68DE3 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC1.63□□□□□ -2.15
USF3Q68DE3 AC123786.2-201ENST00000603459 275 ntBASIC1.63□□□□□ -2.15
USF3Q68DE3 AL359821.1-201ENST00000605519 182 ntBASIC1.63□□□□□ -2.15
USF3Q68DE3 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC1.63□□□□□ -2.15
USF3Q68DE3 AC000123.2-201ENST00000623124 461 ntBASIC1.63□□□□□ -2.15
USF3Q68DE3 AC092881.1-201ENST00000638218 2733 ntBASIC1.63□□□□□ -2.15
USF3Q68DE3 AL359715.4-201ENST00000606629 1436 ntBASIC1.63□□□□□ -2.15
USF3Q68DE3 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC1.63□□□□□ -2.15
USF3Q68DE3 AC010680.1-201ENST00000590024 3590 ntBASIC1.63□□□□□ -2.15
USF3Q68DE3 RPL23AP58-201ENST00000440453 469 ntBASIC1.63□□□□□ -2.15
USF3Q68DE3 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC1.63□□□□□ -2.15
USF3Q68DE3 AL590664.1-201ENST00000448065 339 ntBASIC1.63□□□□□ -2.15
USF3Q68DE3 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC1.63□□□□□ -2.15
USF3Q68DE3 AC005840.1-201ENST00000498412 377 ntBASIC1.63□□□□□ -2.15
USF3Q68DE3 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC1.63□□□□□ -2.15
USF3Q68DE3 AC084757.1-201ENST00000559987 490 ntBASIC1.63□□□□□ -2.15
USF3Q68DE3 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC1.63□□□□□ -2.15
USF3Q68DE3 AL589994.2-201ENST00000621124 579 ntBASIC1.63□□□□□ -2.15
USF3Q68DE3 OR1S1-201ENST00000624470 978 ntBASIC1.63□□□□□ -2.15
USF3Q68DE3 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
USF3Q68DE3 AC004520.1-201ENST00000608362 1413 ntBASIC1.63□□□□□ -2.15
USF3Q68DE3 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
USF3Q68DE3 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
USF3Q68DE3 BTF3P4-201ENST00000418852 495 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 MTND2P2-201ENST00000434633 945 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 ELOCP10-201ENST00000440624 327 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 AC110588.1-201ENST00000559699 137 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC1.62□□□□□ -2.15
USF3Q68DE3 MIR4716-201ENST00000579628 84 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC1.62□□□□□ -2.15
USF3Q68DE3 ELOCP34-201ENST00000604436 327 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 Xist_exon1.1-201ENST00000618930 85 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC1.62□□□□□ -2.15
USF3Q68DE3 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC1.62□□□□□ -2.15
USF3Q68DE3 MTND4P1-201ENST00000457501 1466 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 AC002546.1-201ENST00000588041 2504 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
USF3Q68DE3 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
USF3Q68DE3 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
USF3Q68DE3 FGF7P8-201ENST00000402994 292 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 RNA5SP270-201ENST00000411361 118 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 AC008173.1-201ENST00000418901 264 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
USF3Q68DE3 ELOCP13-201ENST00000443934 329 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 AC245517.4-201ENST00000448601 281 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 AC104115.2-201ENST00000523026 687 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC1.62□□□□□ -2.15
USF3Q68DE3 RPAP2P1-201ENST00000603626 1168 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC1.62□□□□□ -2.15
USF3Q68DE3 C2orf27A-204ENST00000623058 969 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 MFSD8-245ENST00000641743 948 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 SEPT7P7-201ENST00000420492 1301 ntBASIC1.62□□□□□ -2.15
USF3Q68DE3 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC1.61□□□□□ -2.15
USF3Q68DE3 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC1.61□□□□□ -2.15
USF3Q68DE3 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
USF3Q68DE3 AC073264.1-201ENST00000411508 416 ntBASIC1.61□□□□□ -2.15
USF3Q68DE3 RPL23AP76-201ENST00000441860 458 ntBASIC1.61□□□□□ -2.15
USF3Q68DE3 XKRY2-201ENST00000442362 1093 ntBASIC1.61□□□□□ -2.15
USF3Q68DE3 HSPE1P22-201ENST00000456856 327 ntBASIC1.61□□□□□ -2.15
USF3Q68DE3 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC1.61□□□□□ -2.15
USF3Q68DE3 AIG1P1-201ENST00000503376 148 ntBASIC1.61□□□□□ -2.15
USF3Q68DE3 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.61□□□□□ -2.15
USF3Q68DE3 AP003385.6-201ENST00000531603 374 ntBASIC1.61□□□□□ -2.15
USF3Q68DE3 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC1.61□□□□□ -2.15
USF3Q68DE3 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC1.61□□□□□ -2.15
USF3Q68DE3 VN1R80P-201ENST00000597126 338 ntBASIC1.61□□□□□ -2.15
USF3Q68DE3 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC1.61□□□□□ -2.15
USF3Q68DE3 AC090897.3-201ENST00000636973 1157 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms