Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AP000705.1-201ENST00000454567 350 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 HMGN1P7-201ENST00000491722 313 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.8□□□□□ -2.12
CHD9Q3L8U1 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC1.8□□□□□ -2.12
CHD9Q3L8U1 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC1.8□□□□□ -2.12
CHD9Q3L8U1 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC1.8□□□□□ -2.12
CHD9Q3L8U1 COX6CP5-201ENST00000527162 228 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 AL360085.1-201ENST00000604713 532 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC1.8□□□□□ -2.12
CHD9Q3L8U1 AF127577.6-201ENST00000623352 2191 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 OR5AQ1P-202ENST00000641257 1534 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
CHD9Q3L8U1 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
CHD9Q3L8U1 AL121972.1-201ENST00000402023 252 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 RNU6ATAC16P-201ENST00000408591 138 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 RN7SKP123-201ENST00000410732 291 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.8□□□□□ -2.12
CHD9Q3L8U1 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.8□□□□□ -2.12
CHD9Q3L8U1 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC1.8□□□□□ -2.12
CHD9Q3L8U1 MIR4421-201ENST00000578133 69 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 MIR4644-201ENST00000579929 84 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 OR4G1P-201ENST00000588632 938 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 VIS1.1-201ENST00000610517 203 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 AL137847.3-201ENST00000611521 109 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC1.8□□□□□ -2.12
CHD9Q3L8U1 XKRY2-202ENST00000623874 1581 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 XKRY-202ENST00000624960 1581 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
CHD9Q3L8U1 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
CHD9Q3L8U1 MIR3074-201ENST00000384885 81 ntBASIC1.79□□□□□ -2.12
CHD9Q3L8U1 AL035405.1-201ENST00000400795 710 ntBASIC1.79□□□□□ -2.12
CHD9Q3L8U1 RNA5SP338-201ENST00000410495 85 ntBASIC1.79□□□□□ -2.12
CHD9Q3L8U1 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC1.79□□□□□ -2.12
CHD9Q3L8U1 RPS15AP36-201ENST00000492022 382 ntBASIC1.79□□□□□ -2.12
CHD9Q3L8U1 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC1.79□□□□□ -2.12
CHD9Q3L8U1 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC1.79□□□□□ -2.12
CHD9Q3L8U1 FAM35CP-201ENST00000554755 2470 ntBASIC1.79□□□□□ -2.12
CHD9Q3L8U1 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
CHD9Q3L8U1 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC1.79□□□□□ -2.12
CHD9Q3L8U1 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC1.79□□□□□ -2.12
CHD9Q3L8U1 AC060766.3-201ENST00000591442 263 ntBASIC1.79□□□□□ -2.12
CHD9Q3L8U1 AC009314.1-201ENST00000603871 304 ntBASIC1.79□□□□□ -2.12
CHD9Q3L8U1 APOOP1-201ENST00000604695 592 ntBASIC1.79□□□□□ -2.12
CHD9Q3L8U1 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
CHD9Q3L8U1 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC1.79□□□□□ -2.12
CHD9Q3L8U1 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
CHD9Q3L8U1 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
CHD9Q3L8U1 MTND4P23-201ENST00000447723 1363 ntBASIC1.78□□□□□ -2.12
CHD9Q3L8U1 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC1.78□□□□□ -2.12
CHD9Q3L8U1 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC1.78□□□□□ -2.12
CHD9Q3L8U1 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC1.78□□□□□ -2.12
CHD9Q3L8U1 AL358075.3-201ENST00000426289 226 ntBASIC1.78□□□□□ -2.12
CHD9Q3L8U1 SEPT7P3-201ENST00000455017 621 ntBASIC1.78□□□□□ -2.12
CHD9Q3L8U1 TBCAP3-201ENST00000512475 312 ntBASIC1.78□□□□□ -2.12
CHD9Q3L8U1 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC1.78□□□□□ -2.12
CHD9Q3L8U1 VN1R74P-201ENST00000613259 503 ntBASIC1.78□□□□□ -2.12
CHD9Q3L8U1 AC005296.1-201ENST00000616145 209 ntBASIC1.78□□□□□ -2.12
CHD9Q3L8U1 UBE2L2-201ENST00000254302 429 ntBASIC1.78□□□□□ -2.12
CHD9Q3L8U1 AL159169.1-201ENST00000421119 127 ntBASIC1.78□□□□□ -2.12
CHD9Q3L8U1 MTCO3P30-201ENST00000426425 670 ntBASIC1.78□□□□□ -2.12
CHD9Q3L8U1 RPL23AP7-203ENST00000449021 469 ntBASIC1.78□□□□□ -2.12
CHD9Q3L8U1 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC1.78□□□□□ -2.12
CHD9Q3L8U1 AC087241.2-201ENST00000535801 324 ntBASIC1.78□□□□□ -2.12
CHD9Q3L8U1 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC1.78□□□□□ -2.12
CHD9Q3L8U1 AL450326.2-201ENST00000421913 1962 ntBASIC1.78□□□□□ -2.13
CHD9Q3L8U1 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
CHD9Q3L8U1 RBM6-203ENST00000421682 684 ntTSL 2 BASIC1.77□□□□□ -2.13
CHD9Q3L8U1 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.77□□□□□ -2.13
CHD9Q3L8U1 HMGB3P15-201ENST00000507326 574 ntBASIC1.77□□□□□ -2.13
CHD9Q3L8U1 AC124283.4-201ENST00000581815 456 ntBASIC1.77□□□□□ -2.13
CHD9Q3L8U1 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC1.77□□□□□ -2.13
CHD9Q3L8U1 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
CHD9Q3L8U1 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC1.77□□□□□ -2.13
CHD9Q3L8U1 RNU6-1-201ENST00000383898 107 ntBASIC1.77□□□□□ -2.13
CHD9Q3L8U1 RNU6-42P-201ENST00000384165 107 ntBASIC1.77□□□□□ -2.13
CHD9Q3L8U1 RNU6-36P-201ENST00000384172 107 ntBASIC1.77□□□□□ -2.13
CHD9Q3L8U1 RNU6-4P-201ENST00000384205 107 ntBASIC1.77□□□□□ -2.13
CHD9Q3L8U1 RNU6-5P-201ENST00000384238 107 ntBASIC1.77□□□□□ -2.13
CHD9Q3L8U1 RNU6-3P-201ENST00000384314 107 ntBASIC1.77□□□□□ -2.13
CHD9Q3L8U1 RNU6-2-201ENST00000384627 107 ntBASIC1.77□□□□□ -2.13
CHD9Q3L8U1 RNU6-9-201ENST00000384776 107 ntBASIC1.77□□□□□ -2.13
CHD9Q3L8U1 RNU6-33P-201ENST00000384793 107 ntBASIC1.77□□□□□ -2.13
CHD9Q3L8U1 MED6P1-201ENST00000439659 713 ntBASIC1.77□□□□□ -2.13
CHD9Q3L8U1 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC1.77□□□□□ -2.13
CHD9Q3L8U1 AC135721.1-201ENST00000497954 479 ntBASIC1.77□□□□□ -2.13
CHD9Q3L8U1 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC1.77□□□□□ -2.13
CHD9Q3L8U1 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC1.77□□□□□ -2.13
CHD9Q3L8U1 RNU6-6P-201ENST00000606623 107 ntBASIC1.77□□□□□ -2.13
CHD9Q3L8U1 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.77□□□□□ -2.13
CHD9Q3L8U1 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.77□□□□□ -2.13
CHD9Q3L8U1 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.77□□□□□ -2.13
CHD9Q3L8U1 AL133216.2-202ENST00000634512 349 ntBASIC1.77□□□□□ -2.13
CHD9Q3L8U1 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
CHD9Q3L8U1 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
CHD9Q3L8U1 AC006378.2-201ENST00000623178 2476 ntBASIC1.76□□□□□ -2.13
CHD9Q3L8U1 RNU4-13P-201ENST00000364019 141 ntBASIC1.76□□□□□ -2.13
CHD9Q3L8U1 HSPE1P28-201ENST00000443139 211 ntBASIC1.76□□□□□ -2.13
CHD9Q3L8U1 AC098848.2-201ENST00000588023 330 ntBASIC1.76□□□□□ -2.13
CHD9Q3L8U1 AC013444.2-201ENST00000603317 787 ntBASIC1.76□□□□□ -2.13
CHD9Q3L8U1 PVT1_3.1-201ENST00000620853 95 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 133.1 ms