Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 Z82190.1-201ENST00000454534 490 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 SNORD121B-201ENST00000458838 81 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AP000873.1-201ENST00000463987 400 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 RN7SL429P-201ENST00000479090 223 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 RN7SL489P-201ENST00000486185 223 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 RN7SL327P-201ENST00000488659 223 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 NARSP2-201ENST00000518524 679 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 NDUFAF4P1-201ENST00000559425 519 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AC010928.3-201ENST00000587712 541 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 PRELID3BP8-201ENST00000604148 295 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AL031775.1-201ENST00000607014 887 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AC135507.1-201ENST00000607214 561 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AC103710.4-201ENST00000609301 899 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 RN7SL853P-201ENST00000617250 223 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 PABPC1P9-201ENST00000426076 1612 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AC008725.1-201ENST00000605123 2263 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 AL365440.1-201ENST00000436135 2167 ntBASIC3.79□□□□□ -1.8
COL28A1Q2UY09 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 MARK2P15-201ENST00000432204 2186 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 RNU5F-6P-201ENST00000362979 116 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 RN7SKP44-201ENST00000363602 316 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 RNU6-1207P-201ENST00000384343 107 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 Z97055.1-201ENST00000419730 712 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 AC092832.1-201ENST00000422934 400 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 MTND4P32-201ENST00000437189 1237 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 AC091862.1-201ENST00000438016 1100 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 COX6CP2-201ENST00000444980 225 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 EPS15P1-201ENST00000448836 336 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 RPL36AP13-201ENST00000457490 317 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 AC021382.1-201ENST00000483523 359 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 UBE2CP3-201ENST00000502715 450 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 AC025554.1-201ENST00000505641 188 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 RNU6-1095P-201ENST00000516148 108 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 IGKV2D-23-201ENST00000518179 286 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 AC083760.1-201ENST00000589621 670 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 SNRPGP15-201ENST00000600149 222 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 MIR6868-201ENST00000611215 58 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 AC073114.1-201ENST00000612027 490 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 AL158063.1-201ENST00000615349 536 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 AC018755.4-201ENST00000619715 454 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 AC002550.2-201ENST00000621246 394 ntBASIC3.78□□□□□ -1.8
COL28A1Q2UY09 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.78□□□□□ -1.8
COL28A1Q2UY09 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.78□□□□□ -1.81
COL28A1Q2UY09 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.78□□□□□ -1.81
COL28A1Q2UY09 MTND4P4-201ENST00000439033 1366 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 RNU6-97P-201ENST00000363387 104 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 U8.14-201ENST00000390843 143 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 MIR1289-1-201ENST00000408836 144 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 RPL17P12-201ENST00000413391 526 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AC109780.2-201ENST00000413467 845 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 RPS7P15-201ENST00000415804 584 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 CYCSP46-201ENST00000423569 204 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AC006011.1-201ENST00000442758 349 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms