Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 RPS3AP50-201ENST00000487064 803 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AC090453.1-201ENST00000495560 436 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AC010587.1-201ENST00000505809 469 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 RNU6-202P-201ENST00000515998 96 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 RNU6-714P-201ENST00000516963 103 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AC123904.2-201ENST00000548059 300 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AC022655.2-201ENST00000577280 318 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 MAGOH2P-202ENST00000584384 429 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AL121655.1-201ENST00000605811 308 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC4.29□□□□□ -1.72
COL4A3Q01955 AC233309.1-201ENST00000619522 751 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AC009248.2-201ENST00000619826 254 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A3Q01955 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A3Q01955 MIR1302-1-201ENST00000637932 143 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A3Q01955 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A3Q01955 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A3Q01955 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A3Q01955 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A3Q01955 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A3Q01955 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A3Q01955 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.29□□□□□ -1.72
COL4A3Q01955 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A3Q01955 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
COL4A3Q01955 THUMPD3P1-201ENST00000506556 1480 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A3Q01955 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
COL4A3Q01955 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A3Q01955 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A3Q01955 RNU5E-1-201ENST00000362477 120 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 RNU6-738P-201ENST00000384531 106 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AL031679.1-201ENST00000400616 525 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 BTBD10P2-201ENST00000404779 676 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 RN7SKP140-201ENST00000411196 284 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.29□□□□□ -1.72
COL4A3Q01955 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.29□□□□□ -1.72
COL4A3Q01955 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.29□□□□□ -1.72
COL4A3Q01955 RPL36AP53-201ENST00000432891 316 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 MTND6P18-201ENST00000439477 513 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AC002381.1-201ENST00000447049 280 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 ABCF2P2-201ENST00000450549 296 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AP001025.2-201ENST00000490908 477 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AC034222.1-201ENST00000494052 532 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 SUMO2P4-201ENST00000504193 276 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A3Q01955 RNA5SP497-201ENST00000516081 97 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 RN7SKP116-201ENST00000516902 319 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 RN7SKP96-201ENST00000516948 297 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 SOD1P3-201ENST00000518682 454 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A3Q01955 IFITM8P-201ENST00000522529 394 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC4.29□□□□□ -1.72
COL4A3Q01955 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A3Q01955 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.29□□□□□ -1.72
COL4A3Q01955 HMGB1P6-201ENST00000569046 646 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.29□□□□□ -1.72
COL4A3Q01955 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A3Q01955 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC4.29□□□□□ -1.72
COL4A3Q01955 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.29□□□□□ -1.72
COL4A3Q01955 AC093913.1-201ENST00000614178 329 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC4.29□□□□□ -1.72
COL4A3Q01955 CDC27P2-201ENST00000425026 1922 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
COL4A3Q01955 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.28□□□□□ -1.72
COL4A3Q01955 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.28□□□□□ -1.72
COL4A3Q01955 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.28□□□□□ -1.72
COL4A3Q01955 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A3Q01955 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A3Q01955 AC016588.2-201ENST00000632484 3021 ntBASIC4.28□□□□□ -1.72
COL4A3Q01955 RNA5SP175-201ENST00000364275 119 ntBASIC4.28□□□□□ -1.72
COL4A3Q01955 Y_RNA.384-201ENST00000383909 102 ntBASIC4.28□□□□□ -1.72
COL4A3Q01955 MIR606-201ENST00000384851 96 ntBASIC4.28□□□□□ -1.72
COL4A3Q01955 DHFRP6-201ENST00000401776 268 ntBASIC4.28□□□□□ -1.72
COL4A3Q01955 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC4.28□□□□□ -1.72
COL4A3Q01955 AL133384.1-201ENST00000412744 351 ntBASIC4.28□□□□□ -1.72
COL4A3Q01955 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC4.28□□□□□ -1.72
COL4A3Q01955 NCOR1P3-201ENST00000420479 303 ntBASIC4.28□□□□□ -1.72
COL4A3Q01955 ATP5JP1-201ENST00000431631 322 ntBASIC4.28□□□□□ -1.72
COL4A3Q01955 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC4.28□□□□□ -1.72
COL4A3Q01955 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC4.28□□□□□ -1.72
COL4A3Q01955 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC4.28□□□□□ -1.72
COL4A3Q01955 NOTCH2P1-201ENST00000443481 624 ntBASIC4.28□□□□□ -1.72
COL4A3Q01955 PTMAP3-201ENST00000447474 330 ntBASIC4.28□□□□□ -1.72
COL4A3Q01955 RPS11P1-201ENST00000451072 473 ntBASIC4.28□□□□□ -1.72
COL4A3Q01955 AC026410.2-201ENST00000460281 156 ntBASIC4.28□□□□□ -1.72
COL4A3Q01955 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC4.28□□□□□ -1.72
COL4A3Q01955 RPS15AP36-201ENST00000492022 382 ntBASIC4.28□□□□□ -1.72
COL4A3Q01955 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC4.28□□□□□ -1.72
COL4A3Q01955 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.28□□□□□ -1.72
COL4A3Q01955 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC4.28□□□□□ -1.72
COL4A3Q01955 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.28□□□□□ -1.72
COL4A3Q01955 HSPE1P5-201ENST00000561489 272 ntBASIC4.28□□□□□ -1.72
COL4A3Q01955 AC005668.1-201ENST00000571142 476 ntBASIC4.28□□□□□ -1.72
COL4A3Q01955 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.28□□□□□ -1.72
COL4A3Q01955 AL021997.2-201ENST00000615674 271 ntBASIC4.28□□□□□ -1.72
COL4A3Q01955 AL354950.2-201ENST00000617939 290 ntBASIC4.28□□□□□ -1.72
COL4A3Q01955 AL356585.4-201ENST00000623078 1229 ntBASIC4.28□□□□□ -1.72
COL4A3Q01955 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms