Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC108206.1-201ENST00000570186 4159 ntBASIC2.82□□□□□ -1.96
RFX3P48380 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
RFX3P48380 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
RFX3P48380 MIR22-201ENST00000362190 85 ntBASIC2.82□□□□□ -1.96
RFX3P48380 RNU6-1155P-201ENST00000363554 107 ntBASIC2.82□□□□□ -1.96
RFX3P48380 SUGT1P1-201ENST00000379514 476 ntBASIC2.82□□□□□ -1.96
RFX3P48380 SNORA7.4-201ENST00000384249 137 ntBASIC2.82□□□□□ -1.96
RFX3P48380 RNU2-28P-201ENST00000410457 189 ntBASIC2.82□□□□□ -1.96
RFX3P48380 RNA5SP274-201ENST00000410484 108 ntBASIC2.82□□□□□ -1.96
RFX3P48380 RNA5SP344-201ENST00000411081 104 ntBASIC2.82□□□□□ -1.96
RFX3P48380 RPS7P9-201ENST00000414704 586 ntBASIC2.82□□□□□ -1.96
RFX3P48380 AC093151.1-201ENST00000427711 313 ntBASIC2.82□□□□□ -1.96
RFX3P48380 PSMA6P3-201ENST00000428242 164 ntBASIC2.82□□□□□ -1.96
RFX3P48380 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC2.82□□□□□ -1.96
RFX3P48380 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC2.82□□□□□ -1.96
RFX3P48380 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.82□□□□□ -1.96
RFX3P48380 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC2.82□□□□□ -1.96
RFX3P48380 AC092393.1-201ENST00000439625 742 ntBASIC2.82□□□□□ -1.96
RFX3P48380 RPS12P18-201ENST00000442381 270 ntBASIC2.82□□□□□ -1.96
RFX3P48380 RPS3AP43-201ENST00000479743 781 ntBASIC2.82□□□□□ -1.96
RFX3P48380 RN7SL20P-201ENST00000488827 297 ntBASIC2.82□□□□□ -1.96
RFX3P48380 AC008427.1-201ENST00000503102 655 ntBASIC2.82□□□□□ -1.96
RFX3P48380 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.82□□□□□ -1.96
RFX3P48380 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.82□□□□□ -1.96
RFX3P48380 SNORA31.26-201ENST00000517250 137 ntBASIC2.82□□□□□ -1.96
RFX3P48380 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.82□□□□□ -1.96
RFX3P48380 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.82□□□□□ -1.96
RFX3P48380 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
RFX3P48380 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC2.82□□□□□ -1.96
RFX3P48380 AP005205.1-201ENST00000563503 508 ntBASIC2.82□□□□□ -1.96
RFX3P48380 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC2.82□□□□□ -1.96
RFX3P48380 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.82□□□□□ -1.96
RFX3P48380 AC122134.1-202ENST00000569111 1201 ntBASIC2.82□□□□□ -1.96
RFX3P48380 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC2.82□□□□□ -1.96
RFX3P48380 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
RFX3P48380 AL592148.2-201ENST00000612210 372 ntBASIC2.82□□□□□ -1.96
RFX3P48380 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC2.82□□□□□ -1.96
RFX3P48380 MIR6076-201ENST00000617521 113 ntBASIC2.82□□□□□ -1.96
RFX3P48380 AC091046.2-201ENST00000620775 665 ntBASIC2.82□□□□□ -1.96
RFX3P48380 AL157770.1-201ENST00000623049 439 ntBASIC2.82□□□□□ -1.96
RFX3P48380 MIR3651-201ENST00000630427 90 ntBASIC2.82□□□□□ -1.96
RFX3P48380 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC2.82□□□□□ -1.96
RFX3P48380 AL136520.1-201ENST00000600311 1322 ntBASIC2.82□□□□□ -1.96
RFX3P48380 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.82□□□□□ -1.96
RFX3P48380 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
RFX3P48380 CUL1P1-201ENST00000509510 2425 ntBASIC2.82□□□□□ -1.96
RFX3P48380 AL355596.1-201ENST00000565399 3996 ntBASIC2.82□□□□□ -1.96
RFX3P48380 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
RFX3P48380 GABRG2-229ENST00000641017 3628 ntBASIC2.81□□□□□ -1.96
RFX3P48380 RNA5SP374-201ENST00000362939 125 ntBASIC2.81□□□□□ -1.96
RFX3P48380 RNA5SP252-201ENST00000391131 119 ntBASIC2.81□□□□□ -1.96
RFX3P48380 RPS4XP3-201ENST00000398541 413 ntBASIC2.81□□□□□ -1.96
RFX3P48380 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.81□□□□□ -1.96
RFX3P48380 RNU2-47P-201ENST00000410649 186 ntBASIC2.81□□□□□ -1.96
RFX3P48380 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC2.81□□□□□ -1.96
RFX3P48380 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC2.81□□□□□ -1.96
RFX3P48380 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.81□□□□□ -1.96
RFX3P48380 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.81□□□□□ -1.96
RFX3P48380 AC004866.2-201ENST00000438285 481 ntBASIC2.81□□□□□ -1.96
RFX3P48380 PTGES3P1-201ENST00000439531 483 ntBASIC2.81□□□□□ -1.96
RFX3P48380 AL671855.1-201ENST00000446875 1203 ntBASIC2.81□□□□□ -1.96
RFX3P48380 Z82190.1-201ENST00000454534 490 ntBASIC2.81□□□□□ -1.96
RFX3P48380 AC108860.1-201ENST00000484521 383 ntBASIC2.81□□□□□ -1.96
RFX3P48380 ARL4AP2-201ENST00000507378 601 ntBASIC2.81□□□□□ -1.96
RFX3P48380 AC111000.2-201ENST00000507775 550 ntBASIC2.81□□□□□ -1.96
RFX3P48380 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC2.81□□□□□ -1.96
RFX3P48380 SNORA70.16-201ENST00000516390 95 ntBASIC2.81□□□□□ -1.96
RFX3P48380 FAM60DP-201ENST00000524174 632 ntBASIC2.81□□□□□ -1.96
RFX3P48380 OR5AK1P-201ENST00000524837 922 ntBASIC2.81□□□□□ -1.96
RFX3P48380 AP001804.3-201ENST00000525146 880 ntBASIC2.81□□□□□ -1.96
RFX3P48380 MTCO3P15-201ENST00000526563 574 ntBASIC2.81□□□□□ -1.96
RFX3P48380 AC087897.1-201ENST00000550134 156 ntBASIC2.81□□□□□ -1.96
RFX3P48380 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.81□□□□□ -1.96
RFX3P48380 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
RFX3P48380 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
RFX3P48380 AC104072.1-201ENST00000568817 668 ntBASIC2.81□□□□□ -1.96
RFX3P48380 MIR3200-201ENST00000580767 85 ntBASIC2.81□□□□□ -1.96
RFX3P48380 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.81□□□□□ -1.96
RFX3P48380 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC2.81□□□□□ -1.96
RFX3P48380 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.81□□□□□ -1.96
RFX3P48380 AC106791.2-201ENST00000604680 391 ntBASIC2.81□□□□□ -1.96
RFX3P48380 HSPE1P7-201ENST00000604681 321 ntBASIC2.81□□□□□ -1.96
RFX3P48380 AL138955.1-201ENST00000622881 1040 ntBASIC2.81□□□□□ -1.96
RFX3P48380 AP000720.1-201ENST00000625091 483 ntBASIC2.81□□□□□ -1.96
RFX3P48380 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC2.81□□□□□ -1.96
RFX3P48380 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
RFX3P48380 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC2.81□□□□□ -1.96
RFX3P48380 AC090740.1-201ENST00000623193 2262 ntBASIC2.81□□□□□ -1.96
RFX3P48380 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.81□□□□□ -1.96
RFX3P48380 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
RFX3P48380 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC2.8□□□□□ -1.96
RFX3P48380 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
RFX3P48380 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
RFX3P48380 RPL23AP57-201ENST00000332361 466 ntBASIC2.8□□□□□ -1.96
RFX3P48380 RNU5D-1-201ENST00000363299 116 ntBASIC2.8□□□□□ -1.96
RFX3P48380 SNORA71.1-201ENST00000364523 117 ntBASIC2.8□□□□□ -1.96
RFX3P48380 FAT1P1-201ENST00000406588 507 ntBASIC2.8□□□□□ -1.96
RFX3P48380 AC069282.1-201ENST00000411911 526 ntBASIC2.8□□□□□ -1.96
RFX3P48380 BTF3P8-201ENST00000414577 526 ntBASIC2.8□□□□□ -1.96
RFX3P48380 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms