Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.03□□□□□ -1.92
CUX1P39880 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CUX1P39880 FABP5P6-201ENST00000510588 409 ntBASIC3.03□□□□□ -1.92
CUX1P39880 MTND5P4-201ENST00000514978 288 ntBASIC3.03□□□□□ -1.92
CUX1P39880 RNA5SP309-201ENST00000516670 106 ntBASIC3.03□□□□□ -1.92
CUX1P39880 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
CUX1P39880 AC020895.1-201ENST00000595362 272 ntBASIC3.03□□□□□ -1.92
CUX1P39880 AC106730.3-201ENST00000624568 641 ntBASIC3.03□□□□□ -1.92
CUX1P39880 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.03□□□□□ -1.92
CUX1P39880 AC009452.1-201ENST00000640823 606 ntBASIC3.03□□□□□ -1.92
CUX1P39880 RNU6-582P-201ENST00000362989 107 ntBASIC3.02□□□□□ -1.93
CUX1P39880 AC007390.1-201ENST00000415722 356 ntBASIC3.02□□□□□ -1.93
CUX1P39880 FNDC3CP-201ENST00000420795 1155 ntBASIC3.02□□□□□ -1.93
CUX1P39880 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.02□□□□□ -1.93
CUX1P39880 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.02□□□□□ -1.93
CUX1P39880 AC092473.1-201ENST00000441098 221 ntBASIC3.02□□□□□ -1.93
CUX1P39880 RNU6-717P-201ENST00000459076 104 ntBASIC3.02□□□□□ -1.93
CUX1P39880 AC025033.1-201ENST00000463883 194 ntBASIC3.02□□□□□ -1.93
CUX1P39880 AC090543.1-201ENST00000492168 485 ntBASIC3.02□□□□□ -1.93
CUX1P39880 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.02□□□□□ -1.93
CUX1P39880 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.02□□□□□ -1.93
CUX1P39880 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.02□□□□□ -1.93
CUX1P39880 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CUX1P39880 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CUX1P39880 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.01□□□□□ -1.93
CUX1P39880 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.01□□□□□ -1.93
CUX1P39880 HIGD1AP11-201ENST00000438361 280 ntBASIC3.01□□□□□ -1.93
CUX1P39880 USP9YP15-201ENST00000442391 422 ntBASIC3.01□□□□□ -1.93
CUX1P39880 AC087190.1-201ENST00000484462 480 ntBASIC3.01□□□□□ -1.93
CUX1P39880 OR4P1P-201ENST00000530808 1136 ntBASIC3.01□□□□□ -1.93
CUX1P39880 OR4T1P-201ENST00000554933 911 ntBASIC3.01□□□□□ -1.93
CUX1P39880 HMGN2P28-201ENST00000606102 262 ntBASIC3.01□□□□□ -1.93
CUX1P39880 AL353748.2-201ENST00000622148 471 ntBASIC3.01□□□□□ -1.93
CUX1P39880 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3□□□□□ -1.93
CUX1P39880 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
CUX1P39880 MIRLET7G-201ENST00000362280 84 ntBASIC3□□□□□ -1.93
CUX1P39880 USP9YP6-201ENST00000413550 854 ntBASIC3□□□□□ -1.93
CUX1P39880 SEC63P1-201ENST00000425785 1258 ntBASIC3□□□□□ -1.93
CUX1P39880 USP9YP34-201ENST00000453983 808 ntBASIC3□□□□□ -1.93
CUX1P39880 MLLT10P2-201ENST00000506434 249 ntBASIC3□□□□□ -1.93
CUX1P39880 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3□□□□□ -1.93
CUX1P39880 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC3□□□□□ -1.93
CUX1P39880 SUB1P3-201ENST00000564581 315 ntBASIC3□□□□□ -1.93
CUX1P39880 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3□□□□□ -1.93
CUX1P39880 AC010546.1-201ENST00000569391 485 ntBASIC3□□□□□ -1.93
CUX1P39880 AF127577.6-201ENST00000623352 2191 ntBASIC3□□□□□ -1.93
CUX1P39880 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
CUX1P39880 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3□□□□□ -1.93
CUX1P39880 AP001486.2-201ENST00000561652 5113 ntBASIC3□□□□□ -1.93
CUX1P39880 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
CUX1P39880 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
CUX1P39880 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.99□□□□□ -1.93
CUX1P39880 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.99□□□□□ -1.93
CUX1P39880 DNAJC19P4-201ENST00000440115 345 ntBASIC2.99□□□□□ -1.93
CUX1P39880 GTF2IP9-201ENST00000502460 301 ntBASIC2.99□□□□□ -1.93
CUX1P39880 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC2.99□□□□□ -1.93
CUX1P39880 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CUX1P39880 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC2.99□□□□□ -1.93
CUX1P39880 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.99□□□□□ -1.93
CUX1P39880 AC007687.1-201ENST00000602704 304 ntBASIC2.99□□□□□ -1.93
CUX1P39880 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.99□□□□□ -1.93
CUX1P39880 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC2.99□□□□□ -1.93
CUX1P39880 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC2.98□□□□□ -1.93
CUX1P39880 NEK4P1-201ENST00000433383 879 ntBASIC2.98□□□□□ -1.93
CUX1P39880 MTCO1P14-201ENST00000441695 1559 ntBASIC2.98□□□□□ -1.93
CUX1P39880 Z73417.1-201ENST00000447373 778 ntBASIC2.98□□□□□ -1.93
CUX1P39880 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.98□□□□□ -1.93
CUX1P39880 AC079804.2-201ENST00000490376 200 ntBASIC2.98□□□□□ -1.93
CUX1P39880 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC2.98□□□□□ -1.93
CUX1P39880 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.98□□□□□ -1.93
CUX1P39880 AC011155.1-201ENST00000316512 456 ntBASIC2.98□□□□□ -1.93
CUX1P39880 MIR1276-201ENST00000408707 83 ntBASIC2.98□□□□□ -1.93
CUX1P39880 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.98□□□□□ -1.93
CUX1P39880 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC2.98□□□□□ -1.93
CUX1P39880 RPL5P13-201ENST00000462840 709 ntBASIC2.98□□□□□ -1.93
CUX1P39880 AC109486.1-201ENST00000486833 374 ntBASIC2.98□□□□□ -1.93
CUX1P39880 AC090453.1-201ENST00000495560 436 ntBASIC2.98□□□□□ -1.93
CUX1P39880 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC2.98□□□□□ -1.93
CUX1P39880 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC2.98□□□□□ -1.93
CUX1P39880 SNORA4-201ENST00000584302 138 ntBASIC2.98□□□□□ -1.93
CUX1P39880 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC2.98□□□□□ -1.93
CUX1P39880 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
CUX1P39880 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.97□□□□□ -1.93
CUX1P39880 MTCYBP31-201ENST00000438855 1122 ntBASIC2.97□□□□□ -1.93
CUX1P39880 AC009961.3-201ENST00000449832 765 ntBASIC2.97□□□□□ -1.93
CUX1P39880 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.97□□□□□ -1.93
CUX1P39880 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.97□□□□□ -1.93
CUX1P39880 IFNWP4-201ENST00000453148 294 ntBASIC2.97□□□□□ -1.93
CUX1P39880 HMGN1P28-201ENST00000521340 364 ntBASIC2.97□□□□□ -1.93
CUX1P39880 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
CUX1P39880 AP005136.1-201ENST00000579765 429 ntBASIC2.97□□□□□ -1.93
CUX1P39880 AC012531.5-201ENST00000611375 151 ntBASIC2.97□□□□□ -1.93
CUX1P39880 AL589994.2-201ENST00000621124 579 ntBASIC2.97□□□□□ -1.93
CUX1P39880 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.97□□□□□ -1.93
CUX1P39880 AC138649.5-201ENST00000637456 137 ntBASIC2.97□□□□□ -1.93
CUX1P39880 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.96□□□□□ -1.94
CUX1P39880 RPL23AP58-201ENST00000440453 469 ntBASIC2.96□□□□□ -1.94
CUX1P39880 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.96□□□□□ -1.94
CUX1P39880 AC092436.3-201ENST00000511788 257 ntBASIC2.96□□□□□ -1.94
CUX1P39880 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms