Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXD3P31249 SAGE4P-201ENST00000442271 3381 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
HOXD3P31249 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD3P31249 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD3P31249 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD3P31249 MFSD8-242ENST00000641690 4199 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXD3P31249 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD3P31249 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD3P31249 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD3P31249 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD3P31249 SALL4P2-201ENST00000423288 2910 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
HOXD3P31249 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
HOXD3P31249 RNU1-83P-201ENST00000363426 164 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 RNU5E-8P-201ENST00000363502 116 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 RNY1P12-201ENST00000364251 105 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 RNU6-1322P-201ENST00000364309 107 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 RNA5SP515-201ENST00000364570 118 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
HOXD3P31249 UBBP2-201ENST00000376781 231 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
HOXD3P31249 RNU6-39P-201ENST00000384344 107 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 MIR153-1-201ENST00000384914 90 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
HOXD3P31249 AL591416.1-201ENST00000404015 867 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
HOXD3P31249 RN7SKP177-201ENST00000410567 355 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXD3P31249 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXD3P31249 MTCO3P12-201ENST00000416718 547 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 ZNF863P-201ENST00000426746 417 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXD3P31249 FTH1P6-201ENST00000430768 320 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 USP12PX-201ENST00000432383 1057 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXD3P31249 TDGF1P1-201ENST00000445734 527 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXD3P31249 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD3P31249 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXD3P31249 AC022364.2-201ENST00000457963 554 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 SNORD108-201ENST00000459332 71 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXD3P31249 AC091951.2-201ENST00000500762 203 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXD3P31249 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXD3P31249 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC3.5□□□□□ -1.85
HOXD3P31249 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.5□□□□□ -1.85
HOXD3P31249 RNU6-528P-201ENST00000516926 100 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXD3P31249 AP001646.1-201ENST00000527936 915 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD3P31249 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXD3P31249 AC015912.2-201ENST00000571053 181 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 MIR3160-1-201ENST00000577972 85 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD3P31249 AC012417.1-201ENST00000582307 1039 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 AC098848.2-201ENST00000588023 330 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 AC090948.1-201ENST00000607464 549 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 AC007038.2-201ENST00000608095 740 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 AC103710.2-201ENST00000609912 942 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
HOXD3P31249 YWHAEP7-203ENST00000622054 312 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 AC009033.1-201ENST00000624279 431 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 AL136313.1-201ENST00000624804 202 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 AC006065.6-201ENST00000625201 545 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 AC024614.3-201ENST00000637860 256 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD3P31249 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXD3P31249 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD3P31249 AC073544.1-201ENST00000600110 1595 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD3P31249 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.5□□□□□ -1.85
HOXD3P31249 MAPK10-303ENST00000641324 3959 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXD3P31249 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD3P31249 AC105074.1-201ENST00000623380 3095 ntBASIC3.5□□□□□ -1.85
HOXD3P31249 PABPC1P7-201ENST00000413177 1513 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD3P31249 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD3P31249 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD3P31249 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD3P31249 ZNF680P1-201ENST00000436625 1469 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD3P31249 AL138713.1-201ENST00000624026 2130 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD3P31249 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD3P31249 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.49□□□□□ -1.85
HOXD3P31249 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD3P31249 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
HOXD3P31249 Y_RNA.160-201ENST00000363677 92 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 SNORA69-201ENST00000383895 132 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 MIR1271-201ENST00000408537 86 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 ZNF90P2-204ENST00000419323 1075 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD3P31249 RPS27AP12-201ENST00000429552 465 ntBASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms