Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.46□□□□□ -1.86
SIX3O95343 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.46□□□□□ -1.86
SIX3O95343 AC022690.1-201ENST00000526681 550 ntBASIC3.46□□□□□ -1.86
SIX3O95343 HIGD1AP10-201ENST00000527837 282 ntBASIC3.46□□□□□ -1.86
SIX3O95343 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.46□□□□□ -1.86
SIX3O95343 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC3.46□□□□□ -1.86
SIX3O95343 DUXAP6-201ENST00000553858 601 ntBASIC3.46□□□□□ -1.86
SIX3O95343 AC087465.1-201ENST00000560574 245 ntBASIC3.46□□□□□ -1.86
SIX3O95343 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC3.46□□□□□ -1.86
SIX3O95343 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.46□□□□□ -1.86
SIX3O95343 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC3.46□□□□□ -1.86
SIX3O95343 AL391001.1-201ENST00000602747 715 ntBASIC3.46□□□□□ -1.86
SIX3O95343 AL031281.1-201ENST00000604049 488 ntBASIC3.46□□□□□ -1.86
SIX3O95343 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.46□□□□□ -1.86
SIX3O95343 AC068831.7-201ENST00000616954 363 ntBASIC3.46□□□□□ -1.86
SIX3O95343 AC002076.2-201ENST00000617362 122 ntBASIC3.46□□□□□ -1.86
SIX3O95343 XIST_intron.1-201ENST00000619444 68 ntBASIC3.46□□□□□ -1.86
SIX3O95343 AC011330.2-201ENST00000621680 635 ntBASIC3.46□□□□□ -1.86
SIX3O95343 AC009039.2-201ENST00000624524 529 ntBASIC3.46□□□□□ -1.86
SIX3O95343 AC103706.2-201ENST00000638080 240 ntBASIC3.46□□□□□ -1.86
SIX3O95343 MTND5P1-201ENST00000445440 1375 ntBASIC3.46□□□□□ -1.86
SIX3O95343 DDX43P2-201ENST00000604753 1354 ntBASIC3.46□□□□□ -1.86
SIX3O95343 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SIX3O95343 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.45□□□□□ -1.86
SIX3O95343 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SIX3O95343 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
SIX3O95343 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SIX3O95343 SNORD9-201ENST00000362566 104 ntBASIC3.45□□□□□ -1.86
SIX3O95343 SNORA73.2-201ENST00000364946 201 ntBASIC3.45□□□□□ -1.86
SIX3O95343 MIR493-201ENST00000385254 89 ntBASIC3.45□□□□□ -1.86
SIX3O95343 AL136372.1-201ENST00000403060 228 ntBASIC3.45□□□□□ -1.86
SIX3O95343 AC068533.1-201ENST00000418542 415 ntBASIC3.45□□□□□ -1.86
SIX3O95343 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.45□□□□□ -1.86
SIX3O95343 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.45□□□□□ -1.86
SIX3O95343 Z80107.1-201ENST00000436830 412 ntBASIC3.45□□□□□ -1.86
SIX3O95343 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.45□□□□□ -1.86
SIX3O95343 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.45□□□□□ -1.86
SIX3O95343 EEF1E1P1-201ENST00000446998 430 ntBASIC3.45□□□□□ -1.86
SIX3O95343 MTND1P31-201ENST00000449206 961 ntBASIC3.45□□□□□ -1.86
SIX3O95343 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.45□□□□□ -1.86
SIX3O95343 AC012181.1-201ENST00000479895 423 ntBASIC3.45□□□□□ -1.86
SIX3O95343 AL049873.1-201ENST00000480540 376 ntBASIC3.45□□□□□ -1.86
SIX3O95343 AC104685.1-201ENST00000502445 371 ntBASIC3.45□□□□□ -1.86
SIX3O95343 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
SIX3O95343 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.45□□□□□ -1.86
SIX3O95343 AC034244.1-201ENST00000507687 207 ntBASIC3.45□□□□□ -1.86
SIX3O95343 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.45□□□□□ -1.86
SIX3O95343 AL359273.1-201ENST00000510918 627 ntBASIC3.45□□□□□ -1.86
SIX3O95343 MTND5P4-201ENST00000514978 288 ntBASIC3.45□□□□□ -1.86
SIX3O95343 RNU5A-4P-201ENST00000516588 111 ntBASIC3.45□□□□□ -1.86
SIX3O95343 RNU6-714P-201ENST00000516963 103 ntBASIC3.45□□□□□ -1.86
SIX3O95343 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.45□□□□□ -1.86
SIX3O95343 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.45□□□□□ -1.86
SIX3O95343 MIR4425-201ENST00000580572 84 ntBASIC3.45□□□□□ -1.86
SIX3O95343 AL596327.1-201ENST00000603629 213 ntBASIC3.45□□□□□ -1.86
SIX3O95343 AC112220.3-201ENST00000605502 502 ntBASIC3.45□□□□□ -1.86
SIX3O95343 RNU6-88P-201ENST00000606801 100 ntBASIC3.45□□□□□ -1.86
SIX3O95343 AL158211.4-201ENST00000606988 584 ntBASIC3.45□□□□□ -1.86
SIX3O95343 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.45□□□□□ -1.86
SIX3O95343 MIR6715A-201ENST00000615929 79 ntBASIC3.45□□□□□ -1.86
SIX3O95343 AL136981.2-201ENST00000617319 734 ntBASIC3.45□□□□□ -1.86
SIX3O95343 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.45□□□□□ -1.86
SIX3O95343 U4.6-201ENST00000621618 127 ntBASIC3.45□□□□□ -1.86
SIX3O95343 AL136164.4-201ENST00000625013 2135 ntBASIC3.45□□□□□ -1.86
SIX3O95343 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.45□□□□□ -1.86
SIX3O95343 AC009093.8-201ENST00000641769 292 ntBASIC3.45□□□□□ -1.86
SIX3O95343 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.45□□□□□ -1.86
SIX3O95343 AC092326.2-201ENST00000624772 1561 ntBASIC3.45□□□□□ -1.86
SIX3O95343 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.44□□□□□ -1.86
SIX3O95343 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.44□□□□□ -1.86
SIX3O95343 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.44□□□□□ -1.86
SIX3O95343 FRG1CP-201ENST00000358464 769 ntBASIC3.44□□□□□ -1.86
SIX3O95343 MIR30E-201ENST00000362104 92 ntBASIC3.44□□□□□ -1.86
SIX3O95343 RNA5SP124-201ENST00000362739 110 ntBASIC3.44□□□□□ -1.86
SIX3O95343 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.44□□□□□ -1.86
SIX3O95343 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
SIX3O95343 RNU6-83P-201ENST00000384568 112 ntBASIC3.44□□□□□ -1.86
SIX3O95343 RNU6-253P-201ENST00000384730 105 ntBASIC3.44□□□□□ -1.86
SIX3O95343 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
SIX3O95343 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.44□□□□□ -1.86
SIX3O95343 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.44□□□□□ -1.86
SIX3O95343 TMEM167AP1-201ENST00000423409 219 ntBASIC3.44□□□□□ -1.86
SIX3O95343 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC3.44□□□□□ -1.86
SIX3O95343 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.44□□□□□ -1.86
SIX3O95343 OR4K11P-201ENST00000431829 904 ntBASIC3.44□□□□□ -1.86
SIX3O95343 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.44□□□□□ -1.86
SIX3O95343 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.44□□□□□ -1.86
SIX3O95343 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
SIX3O95343 RNA5SP310-201ENST00000459084 116 ntBASIC3.44□□□□□ -1.86
SIX3O95343 AC004801.2-202ENST00000463559 283 ntBASIC3.44□□□□□ -1.86
SIX3O95343 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.44□□□□□ -1.86
SIX3O95343 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.44□□□□□ -1.86
SIX3O95343 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.44□□□□□ -1.86
SIX3O95343 AC022483.1-201ENST00000514020 567 ntBASIC3.44□□□□□ -1.86
SIX3O95343 RNU6-528P-201ENST00000516926 100 ntBASIC3.44□□□□□ -1.86
SIX3O95343 RANP9-201ENST00000519957 271 ntBASIC3.44□□□□□ -1.86
SIX3O95343 DUXAP1-201ENST00000556632 463 ntBASIC3.44□□□□□ -1.86
SIX3O95343 TGIF1P1-201ENST00000558095 802 ntBASIC3.44□□□□□ -1.86
SIX3O95343 AC090186.1-201ENST00000605991 572 ntBASIC3.44□□□□□ -1.86
SIX3O95343 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms