Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AC021146.1-201ENST00000511202 716 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 RNU6-528P-201ENST00000516926 100 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AL352979.3-201ENST00000553515 247 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AL157687.1-201ENST00000554853 619 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AL512360.1-201ENST00000555346 234 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AP005205.1-201ENST00000563503 508 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 KC877982.1-201ENST00000602313 470 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AC012507.3-201ENST00000603556 477 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AC007363.1-201ENST00000604736 620 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AC010680.4-201ENST00000605334 543 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AL136363.1-201ENST00000605349 337 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 uc_338.12-201ENST00000616344 181 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AC099669.2-201ENST00000616549 437 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AL161637.1-201ENST00000622380 412 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AL138713.1-201ENST00000624026 2130 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 AL592182.3-201ENST00000642132 3304 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 NEAT1-202ENST00000501122 22743 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 RNU5A-8P-201ENST00000364102 114 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 RNU6-867P-201ENST00000364956 107 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 RNU6-169P-201ENST00000365336 107 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 RNU4-78P-201ENST00000410940 126 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 AC108032.1-201ENST00000416706 207 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 AL356095.1-201ENST00000417217 199 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 ELOCP4-201ENST00000420090 333 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 AL353193.1-201ENST00000421444 268 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 TPT1P14-201ENST00000448018 505 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 MTND1P9-201ENST00000453775 944 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 RPL21P103-201ENST00000479921 488 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 AL132838.2-201ENST00000492041 314 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 Y_RNA.693-201ENST00000516641 110 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 NRON-201ENST00000517270 370 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 AP003034.1-201ENST00000534621 422 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 AC025678.1-201ENST00000567861 338 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 HNRNPCP4-201ENST00000571636 900 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 AC010201.1-201ENST00000605051 540 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 MIR6867-201ENST00000610636 67 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 MIR6715B-201ENST00000637172 77 ntBASIC4.44□□□□□ -1.7
TDP1Q9NUW8 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.44□□□□□ -1.7
TDP1Q9NUW8 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 FAM91A3P-201ENST00000456826 2544 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 MIR372-201ENST00000362225 67 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 RN7SKP280-201ENST00000364196 304 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 AL445189.1-201ENST00000405722 338 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 MTCO1P20-201ENST00000425366 358 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 MRPS18BP2-201ENST00000434310 759 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 RPL21P89-201ENST00000444021 467 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 RPL23AP20-201ENST00000447965 421 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 AL359073.1-201ENST00000448036 403 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 RPS17P13-201ENST00000448974 407 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 AC108751.2-201ENST00000469993 231 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 AC079382.1-201ENST00000493346 557 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 AC108022.1-201ENST00000493466 478 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 235 ms