Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RNU6-1068P-201ENST00000410958 103 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 AC005154.2-201ENST00000438110 379 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 AC004866.2-201ENST00000438285 481 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 MTCO3P45-201ENST00000443036 613 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 AC073587.1-201ENST00000447093 876 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 PMCHL2-203ENST00000457791 237 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 RN7SL432P-201ENST00000484057 298 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 AC068831.4-201ENST00000556118 109 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 MIR4270-201ENST00000581799 70 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 MIR4293-201ENST00000584305 78 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 AF038458.1-201ENST00000588406 262 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 RMST_3.1-201ENST00000611651 109 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 AL359314.1-201ENST00000616913 261 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 AC131238.1-201ENST00000617135 328 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 AC093648.1-201ENST00000623546 606 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 RSU1P3-201ENST00000412878 835 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 SDCBPP3-201ENST00000419629 891 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 AC245054.1-201ENST00000420944 258 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 RPL36AP10-201ENST00000421785 322 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 MTATP6P16-201ENST00000434543 526 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 MTND4LP16-201ENST00000440828 295 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 Z80107.2-201ENST00000445127 392 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 MTND1P18-201ENST00000448191 573 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 CACYBPP2-201ENST00000453625 678 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 MTND1P11-201ENST00000456661 876 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 RPS27AP17-201ENST00000463344 455 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 NIP7P2-201ENST00000485801 544 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 NIPA2P2-201ENST00000496376 1083 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 RPL38P4-201ENST00000502376 214 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 HMGB3P16-201ENST00000508037 287 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 RNU6-507P-201ENST00000516045 100 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 RNA5SP249-201ENST00000516127 99 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 RNU6-875P-201ENST00000516488 106 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 RNU6-1092P-201ENST00000516955 87 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 AC093249.4-201ENST00000564755 259 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 AC011712.1-201ENST00000588959 234 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 AL035413.2-201ENST00000604801 525 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 AC009994.1-201ENST00000606889 253 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 ZFRP1-201ENST00000457579 2970 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 AP001273.1-201ENST00000624493 3152 ntBASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.72□□□□□ -1.65
TRIM39Q9HCM9 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.65
TRIM39Q9HCM9 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.71□□□□□ -1.65
TRIM39Q9HCM9 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
TRIM39Q9HCM9 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.65
TRIM39Q9HCM9 AL365440.1-201ENST00000436135 2167 ntBASIC4.71□□□□□ -1.65
TRIM39Q9HCM9 AL442639.1-201ENST00000625030 1899 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 RNU6-960P-201ENST00000364056 120 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 SNORA62.1-201ENST00000364287 154 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 Y_RNA.279-201ENST00000364763 95 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 MIR585-201ENST00000384887 94 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 MT-TD-201ENST00000387419 68 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 MIR298-201ENST00000401212 88 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 AL136116.1-201ENST00000403591 381 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 AC009161.1-201ENST00000417306 376 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 RAC1P6-201ENST00000423911 575 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 AC016831.4-201ENST00000438302 307 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 MRPS17P3-201ENST00000465453 385 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 AC091951.2-201ENST00000500762 203 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms