Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 NCAPGP1-201ENST00000505112 1814 ntBASIC4.65□□□□□ -1.67
CHMP4AQ9BY43 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC4.65□□□□□ -1.67
CHMP4AQ9BY43 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.65□□□□□ -1.67
CHMP4AQ9BY43 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 RNU6-1078P-201ENST00000364522 103 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 SNORA73.2-201ENST00000364946 201 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 Y_RNA.465-201ENST00000384293 102 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 RPL7P60-201ENST00000397636 735 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 RN7SKP111-201ENST00000410349 271 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 AL953862.1-201ENST00000423016 168 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 MTND2P39-201ENST00000457230 764 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 RPL31P60-201ENST00000478450 367 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 AC103843.2-201ENST00000530523 682 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 AP000867.2-201ENST00000532468 320 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 CYCSP2-201ENST00000558168 301 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 MTCYBP23-201ENST00000558717 1102 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 AC005951.1-201ENST00000576706 485 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 AP001269.3-201ENST00000588718 329 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 KLKP1-201ENST00000595979 403 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 NUTF2P8-201ENST00000604593 363 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 U3.45-201ENST00000607547 219 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 AC245297.2-201ENST00000610119 565 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 AC243312.2-201ENST00000623340 601 ntBASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CHMP4AQ9BY43 AL022578.1-201ENST00000439330 1433 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 SNORD9-201ENST00000362566 104 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 RFX3-203ENST00000381984 364 ntTSL 3 BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 CD24P4-201ENST00000382840 243 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 RNU1-89P-201ENST00000384592 164 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 PPP1R11P2-201ENST00000423543 382 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 RPL23AP82-202ENST00000427528 469 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 MTCYBP45-201ENST00000435243 565 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 NANOGP2-201ENST00000435391 727 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 RPL21P23-201ENST00000446654 460 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 MTATP6P14-201ENST00000455189 673 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 AL031183.1-201ENST00000457667 207 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 WDR78-207ENST00000488333 613 ntTSL 3 BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 RNU2-27P-201ENST00000516185 142 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 SETP2-201ENST00000553886 926 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 AC090695.1-201ENST00000561269 1222 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 BNIP3P33-201ENST00000598912 569 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 AC004067.1-201ENST00000608733 700 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 AC019176.2-201ENST00000611579 315 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 AC099654.9-201ENST00000637055 678 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 SRP72P2-201ENST00000344851 1979 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 AP000526.1-201ENST00000603308 1388 ntBASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CHMP4AQ9BY43 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 RNU6-223P-201ENST00000362830 107 ntBASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 RNA5SP252-201ENST00000391131 119 ntBASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 U3.39-201ENST00000408569 239 ntBASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 RPS29P4-201ENST00000414733 161 ntBASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 RPL35AP22-201ENST00000436855 335 ntBASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 RBMY2UP-201ENST00000453474 324 ntBASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 PRELID3BP6-201ENST00000503839 571 ntBASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 AC104619.4-201ENST00000510773 249 ntBASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 RNU6-798P-201ENST00000516912 103 ntBASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 AC239860.2-201ENST00000525886 270 ntBASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 AMZ2P1-203ENST00000565833 850 ntBASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 ZNF415P1-201ENST00000582279 1166 ntBASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 AC006077.1-201ENST00000604746 343 ntBASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 AC006213.4-201ENST00000616184 634 ntBASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 AC099654.8-201ENST00000637757 681 ntBASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 AC093908.1-201ENST00000623125 8092 ntBASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CHMP4AQ9BY43 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms