Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC1.81□□□□□ -2.12
VPS13AQ96RL7 SAR1AP4-201ENST00000429225 591 ntBASIC1.81□□□□□ -2.12
VPS13AQ96RL7 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.81□□□□□ -2.12
VPS13AQ96RL7 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC1.81□□□□□ -2.12
VPS13AQ96RL7 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC1.81□□□□□ -2.12
VPS13AQ96RL7 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC1.81□□□□□ -2.12
VPS13AQ96RL7 AC087441.2-201ENST00000529141 262 ntBASIC1.81□□□□□ -2.12
VPS13AQ96RL7 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC1.81□□□□□ -2.12
VPS13AQ96RL7 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
VPS13AQ96RL7 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
VPS13AQ96RL7 RNA5SP37-201ENST00000365420 130 ntBASIC1.81□□□□□ -2.12
VPS13AQ96RL7 SDR42E1P3-201ENST00000438345 502 ntBASIC1.81□□□□□ -2.12
VPS13AQ96RL7 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC1.81□□□□□ -2.12
VPS13AQ96RL7 RN7SKP49-201ENST00000516675 260 ntBASIC1.81□□□□□ -2.12
VPS13AQ96RL7 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC1.81□□□□□ -2.12
VPS13AQ96RL7 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.81□□□□□ -2.12
VPS13AQ96RL7 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC1.8□□□□□ -2.12
VPS13AQ96RL7 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC1.8□□□□□ -2.12
VPS13AQ96RL7 Y_RNA.30-201ENST00000362572 97 ntBASIC1.8□□□□□ -2.12
VPS13AQ96RL7 MIR548J-201ENST00000408833 112 ntBASIC1.8□□□□□ -2.12
VPS13AQ96RL7 IPMKP1-201ENST00000425988 855 ntBASIC1.8□□□□□ -2.12
VPS13AQ96RL7 MUPP-201ENST00000438111 566 ntBASIC1.8□□□□□ -2.12
VPS13AQ96RL7 MED6P1-201ENST00000439659 713 ntBASIC1.8□□□□□ -2.12
VPS13AQ96RL7 AC067805.1-201ENST00000559344 470 ntBASIC1.8□□□□□ -2.12
VPS13AQ96RL7 AC023043.3-201ENST00000593113 385 ntBASIC1.8□□□□□ -2.12
VPS13AQ96RL7 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
VPS13AQ96RL7 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC1.8□□□□□ -2.12
VPS13AQ96RL7 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC1.8□□□□□ -2.12
VPS13AQ96RL7 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
VPS13AQ96RL7 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.8□□□□□ -2.12
VPS13AQ96RL7 Y_RNA.458-201ENST00000384240 102 ntBASIC1.8□□□□□ -2.12
VPS13AQ96RL7 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC1.8□□□□□ -2.12
VPS13AQ96RL7 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC1.8□□□□□ -2.12
VPS13AQ96RL7 AC012119.1-201ENST00000603184 222 ntBASIC1.8□□□□□ -2.12
VPS13AQ96RL7 AC019159.1-201ENST00000605094 187 ntBASIC1.8□□□□□ -2.12
VPS13AQ96RL7 MTND5P3-201ENST00000438536 1800 ntBASIC1.8□□□□□ -2.12
VPS13AQ96RL7 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
VPS13AQ96RL7 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC1.8□□□□□ -2.12
VPS13AQ96RL7 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC1.8□□□□□ -2.12
VPS13AQ96RL7 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
VPS13AQ96RL7 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
VPS13AQ96RL7 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
VPS13AQ96RL7 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
VPS13AQ96RL7 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC1.8□□□□□ -2.12
VPS13AQ96RL7 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC1.8□□□□□ -2.12
VPS13AQ96RL7 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC1.79□□□□□ -2.12
VPS13AQ96RL7 AC097634.1-201ENST00000604491 2467 ntBASIC1.79□□□□□ -2.12
VPS13AQ96RL7 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC1.79□□□□□ -2.12
VPS13AQ96RL7 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC1.79□□□□□ -2.12
VPS13AQ96RL7 ATP5EP1-201ENST00000510257 156 ntBASIC1.79□□□□□ -2.12
VPS13AQ96RL7 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC1.79□□□□□ -2.12
VPS13AQ96RL7 AL389895.1-201ENST00000554127 252 ntBASIC1.79□□□□□ -2.12
VPS13AQ96RL7 AC010678.1-201ENST00000614118 713 ntBASIC1.79□□□□□ -2.12
VPS13AQ96RL7 AC244517.1-201ENST00000606030 2086 ntBASIC1.79□□□□□ -2.12
VPS13AQ96RL7 RNU2-32P-201ENST00000411193 191 ntBASIC1.79□□□□□ -2.12
VPS13AQ96RL7 GSTA11P-201ENST00000452866 669 ntBASIC1.79□□□□□ -2.12
VPS13AQ96RL7 AF186190.1-201ENST00000517470 480 ntBASIC1.79□□□□□ -2.12
VPS13AQ96RL7 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.79□□□□□ -2.12
VPS13AQ96RL7 RPL21P5-201ENST00000554662 472 ntBASIC1.79□□□□□ -2.12
VPS13AQ96RL7 NF1P5-201ENST00000588287 448 ntBASIC1.79□□□□□ -2.12
VPS13AQ96RL7 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC1.79□□□□□ -2.12
VPS13AQ96RL7 AL627309.6-201ENST00000606857 840 ntBASIC1.79□□□□□ -2.12
VPS13AQ96RL7 AC024560.3-201ENST00000608482 349 ntBASIC1.79□□□□□ -2.12
VPS13AQ96RL7 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
VPS13AQ96RL7 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
VPS13AQ96RL7 AL035405.1-201ENST00000400795 710 ntBASIC1.78□□□□□ -2.12
VPS13AQ96RL7 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC1.78□□□□□ -2.12
VPS13AQ96RL7 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC1.78□□□□□ -2.12
VPS13AQ96RL7 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC1.78□□□□□ -2.12
VPS13AQ96RL7 AC092155.2-201ENST00000454675 477 ntBASIC1.78□□□□□ -2.12
VPS13AQ96RL7 RPL23AP55-201ENST00000498163 452 ntBASIC1.78□□□□□ -2.12
VPS13AQ96RL7 ARL4AP2-201ENST00000507378 601 ntBASIC1.78□□□□□ -2.12
VPS13AQ96RL7 AP002748.2-201ENST00000528671 348 ntBASIC1.78□□□□□ -2.12
VPS13AQ96RL7 AP000787.2-201ENST00000604432 568 ntBASIC1.78□□□□□ -2.12
VPS13AQ96RL7 AP001148.1-201ENST00000624124 2359 ntBASIC1.78□□□□□ -2.12
VPS13AQ96RL7 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC1.78□□□□□ -2.12
VPS13AQ96RL7 RNU6-1027P-201ENST00000383998 107 ntBASIC1.78□□□□□ -2.12
VPS13AQ96RL7 MTCYBP31-201ENST00000438855 1122 ntBASIC1.78□□□□□ -2.12
VPS13AQ96RL7 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC1.78□□□□□ -2.12
VPS13AQ96RL7 AP005660.1-201ENST00000522972 293 ntBASIC1.78□□□□□ -2.12
VPS13AQ96RL7 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.78□□□□□ -2.12
VPS13AQ96RL7 ANKRD18EP-201ENST00000405487 2632 ntBASIC1.78□□□□□ -2.12
VPS13AQ96RL7 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC1.78□□□□□ -2.12
VPS13AQ96RL7 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC1.78□□□□□ -2.12
VPS13AQ96RL7 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
VPS13AQ96RL7 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC1.78□□□□□ -2.13
VPS13AQ96RL7 RNU6-53P-201ENST00000365367 106 ntBASIC1.77□□□□□ -2.13
VPS13AQ96RL7 MIR598-201ENST00000384868 97 ntBASIC1.77□□□□□ -2.13
VPS13AQ96RL7 RNA5SP38-201ENST00000410750 119 ntBASIC1.77□□□□□ -2.13
VPS13AQ96RL7 AL513331.1-201ENST00000411908 397 ntBASIC1.77□□□□□ -2.13
VPS13AQ96RL7 ATP5F1P1-201ENST00000433775 569 ntBASIC1.77□□□□□ -2.13
VPS13AQ96RL7 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
VPS13AQ96RL7 SNORA25.15-201ENST00000516487 89 ntBASIC1.77□□□□□ -2.13
VPS13AQ96RL7 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.77□□□□□ -2.13
VPS13AQ96RL7 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC1.77□□□□□ -2.13
VPS13AQ96RL7 AC073869.7-201ENST00000640874 297 ntBASIC1.77□□□□□ -2.13
VPS13AQ96RL7 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.77□□□□□ -2.13
VPS13AQ96RL7 Y_RNA.251-201ENST00000364551 99 ntBASIC1.77□□□□□ -2.13
VPS13AQ96RL7 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC1.77□□□□□ -2.13
VPS13AQ96RL7 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms