Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC43Q96MW1 AL354719.1-201ENST00000406535 843 ntBASIC3.57□□□□□ -1.84
CCDC43Q96MW1 RNU6-1077P-201ENST00000410506 102 ntBASIC3.57□□□□□ -1.84
CCDC43Q96MW1 RNU4-47P-201ENST00000410876 114 ntBASIC3.57□□□□□ -1.84
CCDC43Q96MW1 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.57□□□□□ -1.84
CCDC43Q96MW1 AL513185.3-201ENST00000433335 1300 ntBASIC3.57□□□□□ -1.84
CCDC43Q96MW1 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC43Q96MW1 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC43Q96MW1 HMGB3P6-201ENST00000444896 598 ntBASIC3.57□□□□□ -1.84
CCDC43Q96MW1 Z75741.1-201ENST00000446793 314 ntBASIC3.57□□□□□ -1.84
CCDC43Q96MW1 AL353691.1-201ENST00000451332 387 ntBASIC3.57□□□□□ -1.84
CCDC43Q96MW1 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC43Q96MW1 AL049829.1-201ENST00000465411 156 ntBASIC3.57□□□□□ -1.84
CCDC43Q96MW1 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC43Q96MW1 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC43Q96MW1 AC093278.1-201ENST00000494700 600 ntBASIC3.57□□□□□ -1.84
CCDC43Q96MW1 AC026427.2-201ENST00000506228 536 ntBASIC3.57□□□□□ -1.84
CCDC43Q96MW1 AC010376.1-201ENST00000522101 334 ntBASIC3.57□□□□□ -1.84
CCDC43Q96MW1 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC43Q96MW1 MTND3P13-201ENST00000574391 343 ntBASIC3.57□□□□□ -1.84
CCDC43Q96MW1 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC43Q96MW1 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC43Q96MW1 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC43Q96MW1 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC43Q96MW1 AL365400.2-201ENST00000605604 902 ntBASIC3.57□□□□□ -1.84
CCDC43Q96MW1 AC009570.1-201ENST00000609599 745 ntBASIC3.57□□□□□ -1.84
CCDC43Q96MW1 AC024257.5-201ENST00000612739 531 ntBASIC3.57□□□□□ -1.84
CCDC43Q96MW1 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC43Q96MW1 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC43Q96MW1 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC43Q96MW1 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.56□□□□□ -1.84
CCDC43Q96MW1 RNU4-51P-201ENST00000364206 140 ntBASIC3.56□□□□□ -1.84
CCDC43Q96MW1 SNORA40.2-201ENST00000390847 128 ntBASIC3.56□□□□□ -1.84
CCDC43Q96MW1 DHFRP6-201ENST00000401776 268 ntBASIC3.56□□□□□ -1.84
CCDC43Q96MW1 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.56□□□□□ -1.84
CCDC43Q96MW1 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC43Q96MW1 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC43Q96MW1 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.56□□□□□ -1.84
CCDC43Q96MW1 MTATP6P4-201ENST00000427725 675 ntBASIC3.56□□□□□ -1.84
CCDC43Q96MW1 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.56□□□□□ -1.84
CCDC43Q96MW1 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC43Q96MW1 RPL36AP33-201ENST00000450395 310 ntBASIC3.56□□□□□ -1.84
CCDC43Q96MW1 TRGVB-201ENST00000453257 471 ntBASIC3.56□□□□□ -1.84
CCDC43Q96MW1 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC43Q96MW1 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC43Q96MW1 MTCYBP17-201ENST00000503579 789 ntBASIC3.56□□□□□ -1.84
CCDC43Q96MW1 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC43Q96MW1 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC43Q96MW1 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.56□□□□□ -1.84
CCDC43Q96MW1 AC093331.1-201ENST00000521474 169 ntBASIC3.56□□□□□ -1.84
CCDC43Q96MW1 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
CCDC43Q96MW1 HIGD1AP17-201ENST00000554576 276 ntBASIC3.56□□□□□ -1.84
CCDC43Q96MW1 AP005205.1-201ENST00000563503 508 ntBASIC3.56□□□□□ -1.84
CCDC43Q96MW1 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC43Q96MW1 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC43Q96MW1 AC069304.2-201ENST00000605154 435 ntBASIC3.56□□□□□ -1.84
CCDC43Q96MW1 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC43Q96MW1 AC006111.3-201ENST00000622137 383 ntBASIC3.56□□□□□ -1.84
CCDC43Q96MW1 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC43Q96MW1 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC43Q96MW1 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
CCDC43Q96MW1 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC43Q96MW1 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.55□□□□□ -1.84
CCDC43Q96MW1 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
CCDC43Q96MW1 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC43Q96MW1 AL356131.1-201ENST00000405826 414 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 AL355143.1-201ENST00000407101 841 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC43Q96MW1 MTATP6P27-201ENST00000416987 621 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 Z75741.2-201ENST00000417272 1167 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC43Q96MW1 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC43Q96MW1 HSPE1P28-201ENST00000443139 211 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC43Q96MW1 MTCO3P11-201ENST00000455103 774 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 RN7SL330P-201ENST00000469709 307 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.55□□□□□ -1.84
CCDC43Q96MW1 RN7SL504P-201ENST00000494496 287 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 AC114322.1-201ENST00000506771 926 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC43Q96MW1 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC43Q96MW1 SLC2A13P1-201ENST00000531560 322 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.55□□□□□ -1.84
CCDC43Q96MW1 MIR2682-201ENST00000580305 110 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC43Q96MW1 VN1R83P-201ENST00000595685 445 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC43Q96MW1 AC080013.4-201ENST00000607624 649 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 AC018645.2-201ENST00000609151 472 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC43Q96MW1 AC243773.3-201ENST00000613270 256 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 AC025588.4-201ENST00000615802 908 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 AC099506.2-201ENST00000623074 221 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 OR1S1-201ENST00000624470 978 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 MIR3651-201ENST00000630427 90 ntBASIC3.55□□□□□ -1.84
CCDC43Q96MW1 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.54□□□□□ -1.84
CCDC43Q96MW1 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC43Q96MW1 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC43Q96MW1 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
CCDC43Q96MW1 OR5BR1P-201ENST00000524992 1330 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms