Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 DLEU2_5.1-201ENST00000615567 84 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AC098657.3-201ENST00000620434 263 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 AL732372.2-225ENST00000642124 456 ntBASIC4.34□□□□□ -1.71
CCDC140Q96MF4 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC140Q96MF4 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
CCDC140Q96MF4 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC4.34□□□□□ -1.72
CCDC140Q96MF4 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
CCDC140Q96MF4 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
CCDC140Q96MF4 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
CCDC140Q96MF4 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC4.34□□□□□ -1.72
CCDC140Q96MF4 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC4.34□□□□□ -1.72
CCDC140Q96MF4 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
CCDC140Q96MF4 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.72
CCDC140Q96MF4 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC018809.2-201ENST00000602436 3823 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 Y_RNA.2-201ENST00000362330 96 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 RNA5SP510-201ENST00000364697 99 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 RNU6-331P-201ENST00000384724 107 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC005522.1-201ENST00000395416 346 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 Z99755.1-201ENST00000414048 380 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC113618.1-201ENST00000416747 285 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 USP9YP30-201ENST00000430729 455 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 PPIAP20-201ENST00000449839 135 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC022493.1-201ENST00000492984 337 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC104109.1-201ENST00000498563 436 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 RNU6-1315P-201ENST00000517187 99 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 SNORA43.3-201ENST00000517240 103 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 ASB8-202ENST00000535055 657 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC084783.1-201ENST00000565846 910 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 MIR1273C-201ENST00000578669 77 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC100830.2-201ENST00000581636 240 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC136443.5-201ENST00000603741 370 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 ELOCP5-201ENST00000604924 333 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC011890.2-201ENST00000613393 294 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AL161423.1-201ENST00000613700 262 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC025574.2-201ENST00000615621 514 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AL118522.2-201ENST00000616045 615 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC090510.2-201ENST00000617465 629 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 MIR6729-201ENST00000618194 65 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC008121.3-201ENST00000618726 433 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC144833.1-201ENST00000567953 4089 ntBASIC4.33□□□□□ -1.72
CCDC140Q96MF4 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 TEK-205ENST00000615002 4666 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC140Q96MF4 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 ANKRD26P2-201ENST00000445530 1710 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 Y_RNA.5-201ENST00000362334 102 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 RNA5SP46-201ENST00000362370 120 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 RNA5SP52-201ENST00000362448 134 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 Y_RNA.151-201ENST00000363566 112 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 HSPA8P15-201ENST00000401676 786 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 RNU6-293P-201ENST00000411259 106 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms