Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RNU6-767P-201ENST00000384132 107 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 RNU6-398P-201ENST00000384143 109 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 Y_RNA.490-201ENST00000384413 102 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AL356432.1-201ENST00000405809 419 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 RN7SKP100-201ENST00000411258 284 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC016397.1-201ENST00000412463 242 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC119751.6-201ENST00000416712 186 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AL807761.1-201ENST00000417622 171 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 BEND7P1-201ENST00000422058 457 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC092832.1-201ENST00000422934 400 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 NANOGP6-201ENST00000429190 847 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 RPEP2-201ENST00000432149 701 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AL031584.1-201ENST00000447169 754 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AL645939.1-201ENST00000453429 797 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC099563.1-201ENST00000456086 418 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 RNU6-420P-201ENST00000458780 107 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC007537.2-201ENST00000472093 511 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 S100A11P1-201ENST00000477525 312 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 RPL23AP41-201ENST00000484754 458 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC139783.2-201ENST00000504847 1145 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 HMGB3P16-201ENST00000508037 287 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC010486.1-201ENST00000511793 424 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 IGKV1-32-201ENST00000519290 311 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC018630.1-201ENST00000541376 925 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC078814.3-201ENST00000553036 491 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AL352979.3-201ENST00000553515 247 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AL157394.1-201ENST00000562983 1224 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 XIAPP1-201ENST00000603162 600 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC139792.3-201ENST00000623525 224 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 RNU6-1155P-201ENST00000363554 107 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 RNY3P3-201ENST00000363816 102 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 SNORA51.2-201ENST00000364595 132 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AL357515.1-201ENST00000402967 542 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AC078974.1-201ENST00000411597 223 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 EI24P1-201ENST00000416584 867 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 MTCO3P12-201ENST00000416718 547 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AL353777.1-201ENST00000425552 326 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 FCF1P1-201ENST00000432690 571 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 CYCSP24-201ENST00000445119 316 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AC132479.1-201ENST00000449160 144 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AC010655.1-201ENST00000449336 292 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 RPS20P20-201ENST00000460498 340 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AC010493.1-201ENST00000513479 292 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AC103783.1-201ENST00000520506 373 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AC022690.1-201ENST00000526681 550 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AC133555.2-201ENST00000550213 292 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AL049839.1-201ENST00000556151 657 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 HMGN1P30-201ENST00000589286 268 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AC011468.4-201ENST00000603942 409 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AC013553.2-201ENST00000604244 589 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AL136363.1-201ENST00000605349 337 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AC090948.1-201ENST00000607464 549 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AC010424.2-201ENST00000607594 443 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 MIR6853-201ENST00000619642 74 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AC009268.2-201ENST00000621925 457 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 189.2 ms