Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 CYCSP34-201ENST00000458172 304 ntBASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 RPS29P22-201ENST00000472363 168 ntBASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 AC105758.1-201ENST00000506038 399 ntBASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 Y_RNA.700-201ENST00000516806 100 ntBASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 IGKV2D-23-201ENST00000518179 286 ntBASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 AC022080.3-201ENST00000544433 482 ntBASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 MIR4272-201ENST00000635924 64 ntBASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 AC239868.2-201ENST00000564237 4527 ntBASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
SH3RF1Q7Z6J0 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 MIR133A2-201ENST00000347538 102 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 RNU6-1284P-201ENST00000363701 100 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 SNORD50B-201ENST00000364995 70 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 RNU6-190P-201ENST00000384154 102 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 Y_RNA.526-201ENST00000384572 110 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 MIR92A2-201ENST00000385299 75 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 RNA5SP339-201ENST00000390987 122 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 RNU6-1093P-201ENST00000391194 107 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 AC097374.1-203ENST00000400783 485 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 AP000580.1-201ENST00000404439 358 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 DUTP5-201ENST00000406790 469 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 AC016397.1-201ENST00000412463 242 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 AP000936.3-201ENST00000438127 255 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 NOTCH2P1-201ENST00000443481 624 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 RPS3AP12-201ENST00000443616 753 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 AC243772.1-201ENST00000451620 410 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 RNU2-69P-201ENST00000516061 100 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 AP004607.2-201ENST00000533949 322 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 HMGB2P1-201ENST00000591146 634 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 MIR378J-201ENST00000611988 109 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 OSBPL9P4-201ENST00000371707 1800 ntBASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SH3RF1Q7Z6J0 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 RNU6-1059P-201ENST00000363752 98 ntBASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 RNU6-1243P-201ENST00000364028 107 ntBASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 RNU6-946P-201ENST00000383878 107 ntBASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 RNU6ATAC21P-201ENST00000408656 126 ntBASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 SRSF1P1-201ENST00000424058 520 ntBASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 AL360081.1-201ENST00000428299 555 ntBASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 EZH2P1-201ENST00000431167 291 ntBASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 Z95327.1-201ENST00000446082 482 ntBASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 AC010733.1-201ENST00000451515 401 ntBASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 RPS29P33-201ENST00000456717 146 ntBASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 PRELID3BP1-201ENST00000457142 540 ntBASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 AC087884.1-201ENST00000469738 328 ntBASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 FO393415.2-201ENST00000480085 343 ntBASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 AC083982.1-201ENST00000485679 344 ntBASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 AC135721.1-201ENST00000497954 479 ntBASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 HMGB1P21-201ENST00000502313 581 ntBASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 AC093852.1-201ENST00000503587 266 ntBASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 AC022447.4-201ENST00000504053 364 ntBASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC6.18□□□□□ -1.42
SH3RF1Q7Z6J0 SNORA25.11-201ENST00000515935 105 ntBASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 115.1 ms