Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL512283.1-201ENST00000606756 1384 ntBASIC2.62□□□□□ -1.99
USP54Q70EL1 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC2.62□□□□□ -1.99
USP54Q70EL1 BTBD10P2-201ENST00000404779 676 ntBASIC2.62□□□□□ -1.99
USP54Q70EL1 RNA5SP270-201ENST00000411361 118 ntBASIC2.62□□□□□ -1.99
USP54Q70EL1 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.62□□□□□ -1.99
USP54Q70EL1 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC2.62□□□□□ -1.99
USP54Q70EL1 NDUFB4P6-201ENST00000436819 366 ntBASIC2.62□□□□□ -1.99
USP54Q70EL1 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.62□□□□□ -1.99
USP54Q70EL1 AC069277.2-201ENST00000454211 432 ntBASIC2.62□□□□□ -1.99
USP54Q70EL1 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC2.62□□□□□ -1.99
USP54Q70EL1 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC2.62□□□□□ -1.99
USP54Q70EL1 AC023050.1-201ENST00000498198 304 ntBASIC2.62□□□□□ -1.99
USP54Q70EL1 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.62□□□□□ -1.99
USP54Q70EL1 MTND5P4-201ENST00000514978 288 ntBASIC2.62□□□□□ -1.99
USP54Q70EL1 SNORA31.15-201ENST00000516771 132 ntBASIC2.62□□□□□ -1.99
USP54Q70EL1 SNORA31.26-201ENST00000517250 137 ntBASIC2.62□□□□□ -1.99
USP54Q70EL1 AC073387.2-201ENST00000604797 784 ntBASIC2.62□□□□□ -1.99
USP54Q70EL1 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
USP54Q70EL1 MFSD8-245ENST00000641743 948 ntBASIC2.62□□□□□ -1.99
USP54Q70EL1 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
USP54Q70EL1 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC2.61□□□□□ -1.99
USP54Q70EL1 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC2.61□□□□□ -1.99
USP54Q70EL1 AC092832.1-201ENST00000422934 400 ntBASIC2.61□□□□□ -1.99
USP54Q70EL1 FABP5P13-201ENST00000452144 328 ntBASIC2.61□□□□□ -1.99
USP54Q70EL1 AC233279.1-201ENST00000455300 423 ntBASIC2.61□□□□□ -1.99
USP54Q70EL1 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC2.61□□□□□ -1.99
USP54Q70EL1 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.61□□□□□ -1.99
USP54Q70EL1 VN1R84P-201ENST00000593697 235 ntBASIC2.61□□□□□ -1.99
USP54Q70EL1 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC2.61□□□□□ -1.99
USP54Q70EL1 AC019131.2-201ENST00000609071 870 ntBASIC2.61□□□□□ -1.99
USP54Q70EL1 AC131902.3-201ENST00000611767 581 ntBASIC2.61□□□□□ -1.99
USP54Q70EL1 AC091953.2-201ENST00000623979 160 ntBASIC2.61□□□□□ -1.99
USP54Q70EL1 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.61□□□□□ -1.99
USP54Q70EL1 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USP54Q70EL1 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
USP54Q70EL1 MTND4P13-201ENST00000402078 1023 ntBASIC2.6□□□□□ -1.99
USP54Q70EL1 AC005517.2-201ENST00000424673 553 ntBASIC2.6□□□□□ -1.99
USP54Q70EL1 AC244033.1-201ENST00000426826 870 ntBASIC2.6□□□□□ -1.99
USP54Q70EL1 AC009414.1-201ENST00000427200 443 ntBASIC2.6□□□□□ -1.99
USP54Q70EL1 DPPA2P1-201ENST00000428060 556 ntBASIC2.6□□□□□ -1.99
USP54Q70EL1 OR4K11P-201ENST00000431829 904 ntBASIC2.6□□□□□ -1.99
USP54Q70EL1 TRAPPC2P9-201ENST00000434556 343 ntBASIC2.6□□□□□ -1.99
USP54Q70EL1 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC2.6□□□□□ -1.99
USP54Q70EL1 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
USP54Q70EL1 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
USP54Q70EL1 MIR4458-201ENST00000578872 75 ntBASIC2.6□□□□□ -1.99
USP54Q70EL1 MIR3683-201ENST00000580847 82 ntBASIC2.6□□□□□ -1.99
USP54Q70EL1 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.6□□□□□ -1.99
USP54Q70EL1 AC007687.1-201ENST00000602704 304 ntBASIC2.6□□□□□ -1.99
USP54Q70EL1 AC018754.1-201ENST00000607486 925 ntBASIC2.6□□□□□ -1.99
USP54Q70EL1 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
USP54Q70EL1 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
USP54Q70EL1 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
USP54Q70EL1 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.6□□□□□ -1.99
USP54Q70EL1 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
USP54Q70EL1 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC2.6□□□□□ -1.99
USP54Q70EL1 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.6□□□□□ -1.99
USP54Q70EL1 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
USP54Q70EL1 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.6□□□□□ -1.99
USP54Q70EL1 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
USP54Q70EL1 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
USP54Q70EL1 MIR378A-201ENST00000362177 66 ntBASIC2.6□□□□□ -1.99
USP54Q70EL1 RAD23BP2-201ENST00000416003 1207 ntBASIC2.6□□□□□ -1.99
USP54Q70EL1 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.6□□□□□ -1.99
USP54Q70EL1 AC009965.2-201ENST00000425328 970 ntBASIC2.6□□□□□ -1.99
USP54Q70EL1 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.6□□□□□ -1.99
USP54Q70EL1 ELOCP13-201ENST00000443934 329 ntBASIC2.6□□□□□ -1.99
USP54Q70EL1 RPL23AP7-203ENST00000449021 469 ntBASIC2.6□□□□□ -1.99
USP54Q70EL1 AC027673.1-201ENST00000456245 405 ntBASIC2.6□□□□□ -1.99
USP54Q70EL1 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC2.6□□□□□ -1.99
USP54Q70EL1 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC2.6□□□□□ -1.99
USP54Q70EL1 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC2.6□□□□□ -1.99
USP54Q70EL1 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC2.6□□□□□ -1.99
USP54Q70EL1 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC2.6□□□□□ -1.99
USP54Q70EL1 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC2.6□□□□□ -1.99
USP54Q70EL1 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
USP54Q70EL1 CCNB2P1-201ENST00000399411 1150 ntBASIC2.59□□□□□ -2
USP54Q70EL1 HSPE1P26-201ENST00000405341 275 ntBASIC2.59□□□□□ -2
USP54Q70EL1 AL034374.1-201ENST00000406329 351 ntBASIC2.59□□□□□ -2
USP54Q70EL1 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.59□□□□□ -2
USP54Q70EL1 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -2
USP54Q70EL1 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.59□□□□□ -2
USP54Q70EL1 OR52A4P-203ENST00000498233 1014 ntBASIC2.59□□□□□ -2
USP54Q70EL1 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC2.59□□□□□ -2
USP54Q70EL1 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC2.59□□□□□ -2
USP54Q70EL1 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC2.59□□□□□ -2
USP54Q70EL1 AC104986.1-201ENST00000517978 436 ntBASIC2.59□□□□□ -2
USP54Q70EL1 NPM1P52-201ENST00000518264 846 ntBASIC2.59□□□□□ -2
USP54Q70EL1 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC2.59□□□□□ -2
USP54Q70EL1 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC2.59□□□□□ -2
USP54Q70EL1 AC008083.2-201ENST00000546707 476 ntBASIC2.59□□□□□ -2
USP54Q70EL1 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.59□□□□□ -2
USP54Q70EL1 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC2.59□□□□□ -2
USP54Q70EL1 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.59□□□□□ -2
USP54Q70EL1 AC002064.3-201ENST00000623448 346 ntBASIC2.59□□□□□ -2
USP54Q70EL1 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
USP54Q70EL1 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC2.58□□□□□ -2
USP54Q70EL1 Y_RNA.269-201ENST00000364685 89 ntBASIC2.58□□□□□ -2
USP54Q70EL1 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
USP54Q70EL1 U8.10-201ENST00000384260 133 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms