Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 WARS2P1-201ENST00000429678 537 ntBASIC1.68□□□□□ -2.14
USF3Q68DE3 AC093392.2-201ENST00000450682 337 ntBASIC1.68□□□□□ -2.14
USF3Q68DE3 RPL23AP63-201ENST00000498752 471 ntBASIC1.68□□□□□ -2.14
USF3Q68DE3 RNA5SP445-201ENST00000515889 115 ntBASIC1.68□□□□□ -2.14
USF3Q68DE3 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC1.68□□□□□ -2.14
USF3Q68DE3 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC1.68□□□□□ -2.14
USF3Q68DE3 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC1.68□□□□□ -2.14
USF3Q68DE3 AC009314.1-201ENST00000603871 304 ntBASIC1.68□□□□□ -2.14
USF3Q68DE3 GMFB-210ENST00000628554 639 ntTSL 4 BASIC1.68□□□□□ -2.14
USF3Q68DE3 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
USF3Q68DE3 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
USF3Q68DE3 AC000367.1-201ENST00000452711 1766 ntBASIC1.68□□□□□ -2.14
USF3Q68DE3 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
USF3Q68DE3 MIR337-201ENST00000362281 93 ntBASIC1.67□□□□□ -2.14
USF3Q68DE3 MTCO3P30-201ENST00000426425 670 ntBASIC1.67□□□□□ -2.14
USF3Q68DE3 RNU7-157P-201ENST00000459600 66 ntBASIC1.67□□□□□ -2.14
USF3Q68DE3 AC090515.1-201ENST00000465295 476 ntBASIC1.67□□□□□ -2.14
USF3Q68DE3 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC1.67□□□□□ -2.14
USF3Q68DE3 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC1.67□□□□□ -2.14
USF3Q68DE3 SNRPGP19-201ENST00000603826 189 ntBASIC1.67□□□□□ -2.14
USF3Q68DE3 AP004372.1-201ENST00000604842 844 ntBASIC1.67□□□□□ -2.14
USF3Q68DE3 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
USF3Q68DE3 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
USF3Q68DE3 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.67□□□□□ -2.14
USF3Q68DE3 THUMPD3P1-201ENST00000506556 1480 ntBASIC1.67□□□□□ -2.14
USF3Q68DE3 SNORA51.11-201ENST00000384442 131 ntBASIC1.67□□□□□ -2.14
USF3Q68DE3 AL513331.1-201ENST00000411908 397 ntBASIC1.67□□□□□ -2.14
USF3Q68DE3 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.67□□□□□ -2.14
USF3Q68DE3 ISCA1P3-201ENST00000577104 373 ntBASIC1.67□□□□□ -2.14
USF3Q68DE3 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC1.67□□□□□ -2.14
USF3Q68DE3 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.67□□□□□ -2.14
USF3Q68DE3 AC002984.1-201ENST00000591692 448 ntBASIC1.67□□□□□ -2.14
USF3Q68DE3 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
USF3Q68DE3 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.66□□□□□ -2.14
USF3Q68DE3 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
USF3Q68DE3 Y_RNA.355-201ENST00000365462 98 ntBASIC1.66□□□□□ -2.14
USF3Q68DE3 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
USF3Q68DE3 AC019129.1-201ENST00000403786 261 ntBASIC1.66□□□□□ -2.14
USF3Q68DE3 AL445685.2-201ENST00000422551 342 ntBASIC1.66□□□□□ -2.14
USF3Q68DE3 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC1.66□□□□□ -2.14
USF3Q68DE3 RPL7P54-201ENST00000438336 674 ntBASIC1.66□□□□□ -2.14
USF3Q68DE3 AC098583.1-201ENST00000480875 255 ntBASIC1.66□□□□□ -2.14
USF3Q68DE3 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.66□□□□□ -2.14
USF3Q68DE3 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.66□□□□□ -2.14
USF3Q68DE3 snoU13.31-201ENST00000607291 104 ntBASIC1.66□□□□□ -2.14
USF3Q68DE3 AC005539.1-201ENST00000443768 1479 ntBASIC1.66□□□□□ -2.14
USF3Q68DE3 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC1.66□□□□□ -2.14
USF3Q68DE3 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
USF3Q68DE3 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
USF3Q68DE3 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC1.66□□□□□ -2.14
USF3Q68DE3 AL009174.1-201ENST00000426577 416 ntBASIC1.66□□□□□ -2.14
USF3Q68DE3 RPS26P30-201ENST00000443431 335 ntBASIC1.66□□□□□ -2.14
USF3Q68DE3 RPL23AP7-203ENST00000449021 469 ntBASIC1.66□□□□□ -2.14
USF3Q68DE3 AC022431.1-201ENST00000450941 438 ntBASIC1.66□□□□□ -2.14
USF3Q68DE3 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC1.66□□□□□ -2.14
USF3Q68DE3 AC025033.1-201ENST00000463883 194 ntBASIC1.66□□□□□ -2.14
USF3Q68DE3 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
USF3Q68DE3 AC011352.3-201ENST00000505162 593 ntBASIC1.66□□□□□ -2.14
USF3Q68DE3 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC1.66□□□□□ -2.14
USF3Q68DE3 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC1.66□□□□□ -2.14
USF3Q68DE3 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC1.66□□□□□ -2.14
USF3Q68DE3 VIS1.1-201ENST00000610517 203 ntBASIC1.66□□□□□ -2.14
USF3Q68DE3 AC013562.2-201ENST00000611632 603 ntBASIC1.66□□□□□ -2.14
USF3Q68DE3 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
USF3Q68DE3 AC002064.3-201ENST00000623448 346 ntBASIC1.66□□□□□ -2.14
USF3Q68DE3 RPL23AP61-201ENST00000623642 466 ntBASIC1.66□□□□□ -2.14
USF3Q68DE3 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC1.66□□□□□ -2.14
USF3Q68DE3 CR382285.2-201ENST00000624662 1495 ntBASIC1.65□□□□□ -2.14
USF3Q68DE3 AGL-204ENST00000370161 6923 ntTSL 5 BASIC1.65□□□□□ -2.14
USF3Q68DE3 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
USF3Q68DE3 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
USF3Q68DE3 EI24P1-201ENST00000416584 867 ntBASIC1.65□□□□□ -2.15
USF3Q68DE3 AC009965.2-201ENST00000425328 970 ntBASIC1.65□□□□□ -2.15
USF3Q68DE3 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC1.65□□□□□ -2.15
USF3Q68DE3 AL109741.2-201ENST00000455561 343 ntBASIC1.65□□□□□ -2.15
USF3Q68DE3 AP000852.1-201ENST00000472460 573 ntBASIC1.65□□□□□ -2.15
USF3Q68DE3 MTAPP1-201ENST00000489154 819 ntBASIC1.65□□□□□ -2.15
USF3Q68DE3 AC068446.3-201ENST00000555285 382 ntBASIC1.65□□□□□ -2.15
USF3Q68DE3 RPS3AP23-202ENST00000574601 686 ntBASIC1.65□□□□□ -2.15
USF3Q68DE3 KATNBL1P1-201ENST00000605192 748 ntBASIC1.65□□□□□ -2.15
USF3Q68DE3 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
USF3Q68DE3 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC1.65□□□□□ -2.15
USF3Q68DE3 MTCO1P6-201ENST00000481192 1384 ntBASIC1.65□□□□□ -2.15
USF3Q68DE3 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.64□□□□□ -2.15
USF3Q68DE3 RNU6-661P-201ENST00000362409 107 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 Y_RNA.116-201ENST00000363292 103 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC1.64□□□□□ -2.15
USF3Q68DE3 MIR7-2-201ENST00000384970 110 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 SNORA67.5-201ENST00000391036 107 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC1.64□□□□□ -2.15
USF3Q68DE3 AC009302.1-201ENST00000417147 390 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC1.64□□□□□ -2.15
USF3Q68DE3 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC1.64□□□□□ -2.15
USF3Q68DE3 OR51B8P-201ENST00000449892 769 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC1.64□□□□□ -2.15
USF3Q68DE3 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC1.64□□□□□ -2.15
USF3Q68DE3 IGHVIII-38-1-201ENST00000521454 282 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 AC068790.3-201ENST00000602988 553 ntBASIC1.64□□□□□ -2.15
USF3Q68DE3 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC1.64□□□□□ -2.15
USF3Q68DE3 AL391813.2-201ENST00000609113 322 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms