Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS53Q5VIR6 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS53Q5VIR6 POU5F1P7-201ENST00000508759 541 ntBASIC4.6□□□□□ -1.67
VPS53Q5VIR6 NPM1P41-201ENST00000512920 831 ntBASIC4.6□□□□□ -1.67
VPS53Q5VIR6 AC093853.1-201ENST00000515689 483 ntBASIC4.6□□□□□ -1.67
VPS53Q5VIR6 RNA5SP143-201ENST00000516936 115 ntBASIC4.6□□□□□ -1.67
VPS53Q5VIR6 PAICSP4-201ENST00000517543 1253 ntBASIC4.6□□□□□ -1.67
VPS53Q5VIR6 AC022695.1-201ENST00000522089 237 ntBASIC4.6□□□□□ -1.67
VPS53Q5VIR6 AC007991.1-201ENST00000522680 631 ntBASIC4.6□□□□□ -1.67
VPS53Q5VIR6 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS53Q5VIR6 AP002748.2-201ENST00000528671 348 ntBASIC4.6□□□□□ -1.67
VPS53Q5VIR6 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS53Q5VIR6 AP004247.1-201ENST00000531556 1289 ntBASIC4.6□□□□□ -1.67
VPS53Q5VIR6 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS53Q5VIR6 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS53Q5VIR6 CFL2-206ENST00000556161 546 ntTSL 4 BASIC4.6□□□□□ -1.67
VPS53Q5VIR6 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.6□□□□□ -1.67
VPS53Q5VIR6 HSPE1P3-201ENST00000559254 309 ntBASIC4.6□□□□□ -1.67
VPS53Q5VIR6 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS53Q5VIR6 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS53Q5VIR6 AC087499.8-201ENST00000578406 226 ntBASIC4.6□□□□□ -1.67
VPS53Q5VIR6 AC020914.4-201ENST00000597690 277 ntBASIC4.6□□□□□ -1.67
VPS53Q5VIR6 AC027807.2-201ENST00000616099 408 ntBASIC4.6□□□□□ -1.67
VPS53Q5VIR6 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS53Q5VIR6 NCAPGP1-201ENST00000505112 1814 ntBASIC4.6□□□□□ -1.67
VPS53Q5VIR6 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS53Q5VIR6 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 MTND3P21-201ENST00000433774 331 ntBASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 MTND1P1-201ENST00000445453 368 ntBASIC4.59□□□□□ -1.67
VPS53Q5VIR6 MTCO1P27-201ENST00000448269 226 ntBASIC4.59□□□□□ -1.67
VPS53Q5VIR6 ARPC3P5-201ENST00000448802 534 ntBASIC4.59□□□□□ -1.67
VPS53Q5VIR6 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 UBDP1-202ENST00000457888 382 ntBASIC4.59□□□□□ -1.67
VPS53Q5VIR6 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 FTH1P2-201ENST00000466086 412 ntBASIC4.59□□□□□ -1.67
VPS53Q5VIR6 RPS15AP17-201ENST00000470598 390 ntBASIC4.59□□□□□ -1.67
VPS53Q5VIR6 LARP1BP2-201ENST00000486594 519 ntBASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AC023424.2-201ENST00000493479 777 ntBASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AC087883.1-201ENST00000551882 391 ntBASIC4.59□□□□□ -1.67
VPS53Q5VIR6 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AL355812.1-201ENST00000603215 216 ntBASIC4.59□□□□□ -1.67
VPS53Q5VIR6 PRELID3BP8-201ENST00000604148 295 ntBASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AL109618.2-201ENST00000605527 211 ntBASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AC025588.4-201ENST00000615802 908 ntBASIC4.59□□□□□ -1.67
VPS53Q5VIR6 U4.5-201ENST00000617137 123 ntBASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AC130650.2-201ENST00000618736 2403 ntBASIC4.59□□□□□ -1.67
VPS53Q5VIR6 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 AC093591.3-201ENST00000634516 308 ntBASIC4.59□□□□□ -1.67
VPS53Q5VIR6 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 CRYM-AS1-204ENST00000637983 556 ntBASIC4.59□□□□□ -1.67
VPS53Q5VIR6 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS53Q5VIR6 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
VPS53Q5VIR6 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.59□□□□□ -1.68
VPS53Q5VIR6 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 ANKRD36BP1-202ENST00000604892 1417 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 GDI2P1-201ENST00000429312 1336 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 RNVU1-3-201ENST00000364313 161 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 RN7SKP266-201ENST00000410232 287 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 RNU6-248P-201ENST00000410720 107 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 RPL7P30-201ENST00000420888 709 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 AL139247.1-201ENST00000422768 325 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 RPS6P12-201ENST00000432491 726 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 RPL21P11-201ENST00000461458 483 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 RN7SL93P-201ENST00000463035 293 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 AC084198.1-201ENST00000477747 402 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 TMED11P-201ENST00000479478 690 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 AC106872.3-201ENST00000495104 446 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms