Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
CCDC88AQ3V6T2 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.98
CCDC88AQ3V6T2 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC2.65□□□□□ -1.98
CCDC88AQ3V6T2 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
CCDC88AQ3V6T2 Y_RNA.269-201ENST00000364685 89 ntBASIC2.65□□□□□ -1.98
CCDC88AQ3V6T2 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC2.65□□□□□ -1.98
CCDC88AQ3V6T2 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.65□□□□□ -1.98
CCDC88AQ3V6T2 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC2.65□□□□□ -1.98
CCDC88AQ3V6T2 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
CCDC88AQ3V6T2 RPS27P5-201ENST00000444247 244 ntBASIC2.65□□□□□ -1.98
CCDC88AQ3V6T2 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC2.65□□□□□ -1.98
CCDC88AQ3V6T2 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.65□□□□□ -1.98
CCDC88AQ3V6T2 AC117525.1-201ENST00000515228 503 ntBASIC2.65□□□□□ -1.98
CCDC88AQ3V6T2 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.65□□□□□ -1.98
CCDC88AQ3V6T2 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.65□□□□□ -1.98
CCDC88AQ3V6T2 AL356575.1-201ENST00000603008 283 ntBASIC2.65□□□□□ -1.98
CCDC88AQ3V6T2 AC010378.1-201ENST00000619270 362 ntBASIC2.65□□□□□ -1.98
CCDC88AQ3V6T2 AP003072.4-201ENST00000624580 310 ntBASIC2.65□□□□□ -1.98
CCDC88AQ3V6T2 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.65□□□□□ -1.99
CCDC88AQ3V6T2 AL359715.4-201ENST00000606629 1436 ntBASIC2.65□□□□□ -1.99
CCDC88AQ3V6T2 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
CCDC88AQ3V6T2 SNORA48.3-201ENST00000391081 134 ntBASIC2.65□□□□□ -1.99
CCDC88AQ3V6T2 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC2.65□□□□□ -1.99
CCDC88AQ3V6T2 HSPE1P28-201ENST00000443139 211 ntBASIC2.65□□□□□ -1.99
CCDC88AQ3V6T2 PTGES3P5-201ENST00000455109 434 ntBASIC2.65□□□□□ -1.99
CCDC88AQ3V6T2 SUB1P3-201ENST00000564581 315 ntBASIC2.65□□□□□ -1.99
CCDC88AQ3V6T2 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
CCDC88AQ3V6T2 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 RNU6-457P-201ENST00000363999 107 ntBASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 MIR221-201ENST00000385135 110 ntBASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 CYCSP49-201ENST00000420810 319 ntBASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 KATNBL1P4-201ENST00000503545 918 ntBASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 HMGB3P15-201ENST00000507326 574 ntBASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 AC117522.2-201ENST00000510049 657 ntBASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 RNU2-58P-201ENST00000516403 183 ntBASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 AC025881.1-201ENST00000518851 512 ntBASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 AC005021.1-201ENST00000608730 355 ntBASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 AC093673.2-201ENST00000609674 331 ntBASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 AC110774.1-201ENST00000623567 2018 ntBASIC2.64□□□□□ -1.99
CCDC88AQ3V6T2 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.63□□□□□ -1.99
CCDC88AQ3V6T2 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC88AQ3V6T2 Y_RNA.466-201ENST00000384294 113 ntBASIC2.63□□□□□ -1.99
CCDC88AQ3V6T2 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
CCDC88AQ3V6T2 RNA5SP181-201ENST00000410246 98 ntBASIC2.63□□□□□ -1.99
CCDC88AQ3V6T2 EI24P1-201ENST00000416584 867 ntBASIC2.63□□□□□ -1.99
CCDC88AQ3V6T2 AL445685.2-201ENST00000422551 342 ntBASIC2.63□□□□□ -1.99
CCDC88AQ3V6T2 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC2.63□□□□□ -1.99
CCDC88AQ3V6T2 AL353898.1-201ENST00000444055 238 ntBASIC2.63□□□□□ -1.99
CCDC88AQ3V6T2 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC88AQ3V6T2 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.63□□□□□ -1.99
CCDC88AQ3V6T2 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.63□□□□□ -1.99
CCDC88AQ3V6T2 EIF4EP5-201ENST00000528228 640 ntBASIC2.63□□□□□ -1.99
CCDC88AQ3V6T2 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.63□□□□□ -1.99
CCDC88AQ3V6T2 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
CCDC88AQ3V6T2 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC88AQ3V6T2 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC88AQ3V6T2 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 MIR378A-201ENST00000362177 66 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 Y_RNA.508-201ENST00000384502 114 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 RNU4-62P-201ENST00000410125 130 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 AC098826.1-201ENST00000433943 471 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 AL392003.1-201ENST00000434394 243 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 SETP8-201ENST00000435341 628 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 TRBV26-201ENST00000456572 344 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 TBCAP3-201ENST00000512475 312 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 MTND5P4-201ENST00000514978 288 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 AL160237.3-201ENST00000604114 1013 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 AP000787.2-201ENST00000604432 568 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 AC022079.2-201ENST00000619739 566 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 Y_RNA.796-201ENST00000364268 102 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 Y_RNA.799-201ENST00000364992 102 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 MIR518E-201ENST00000385252 88 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 MIR591-201ENST00000385290 95 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 RAD23BP2-201ENST00000416003 1207 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 RPL5P13-201ENST00000462840 709 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 VN1R80P-201ENST00000597126 338 ntBASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC88AQ3V6T2 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC88AQ3V6T2 RNU4-31P-201ENST00000384211 141 ntBASIC2.61□□□□□ -1.99
CCDC88AQ3V6T2 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC2.61□□□□□ -1.99
CCDC88AQ3V6T2 RNA5SP270-201ENST00000411361 118 ntBASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms