Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
CHD9Q3L8U1 LSM5-205ENST00000409952 687 ntTSL 4 BASIC1.84□□□□□ -2.11
CHD9Q3L8U1 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC1.84□□□□□ -2.11
CHD9Q3L8U1 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.84□□□□□ -2.11
CHD9Q3L8U1 RPL23AP20-201ENST00000447965 421 ntBASIC1.84□□□□□ -2.11
CHD9Q3L8U1 RPL12P25-201ENST00000455592 494 ntBASIC1.84□□□□□ -2.11
CHD9Q3L8U1 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC1.84□□□□□ -2.11
CHD9Q3L8U1 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC1.84□□□□□ -2.11
CHD9Q3L8U1 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC1.84□□□□□ -2.11
CHD9Q3L8U1 RN7SL622P-201ENST00000585292 275 ntBASIC1.84□□□□□ -2.11
CHD9Q3L8U1 TOMM22P1-201ENST00000418578 312 ntBASIC1.84□□□□□ -2.11
CHD9Q3L8U1 AC025033.1-201ENST00000463883 194 ntBASIC1.84□□□□□ -2.11
CHD9Q3L8U1 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC1.84□□□□□ -2.11
CHD9Q3L8U1 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC1.84□□□□□ -2.11
CHD9Q3L8U1 FAM92A1P1-201ENST00000528023 890 ntBASIC1.84□□□□□ -2.11
CHD9Q3L8U1 AC008015.1-201ENST00000555505 465 ntBASIC1.84□□□□□ -2.11
CHD9Q3L8U1 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.84□□□□□ -2.11
CHD9Q3L8U1 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.84□□□□□ -2.11
CHD9Q3L8U1 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
CHD9Q3L8U1 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.12
CHD9Q3L8U1 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC1.84□□□□□ -2.12
CHD9Q3L8U1 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
CHD9Q3L8U1 SAR1AP4-201ENST00000429225 591 ntBASIC1.84□□□□□ -2.12
CHD9Q3L8U1 RN7SKP40-201ENST00000517211 242 ntBASIC1.84□□□□□ -2.12
CHD9Q3L8U1 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC1.84□□□□□ -2.12
CHD9Q3L8U1 CBX3P5-201ENST00000552017 521 ntBASIC1.84□□□□□ -2.12
CHD9Q3L8U1 MTCO3P13-201ENST00000577757 781 ntBASIC1.84□□□□□ -2.12
CHD9Q3L8U1 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC1.84□□□□□ -2.12
CHD9Q3L8U1 MIR6767-201ENST00000637302 66 ntBASIC1.84□□□□□ -2.12
CHD9Q3L8U1 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC1.83□□□□□ -2.12
CHD9Q3L8U1 RNA5SP160-201ENST00000364866 120 ntBASIC1.83□□□□□ -2.12
CHD9Q3L8U1 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
CHD9Q3L8U1 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC1.83□□□□□ -2.12
CHD9Q3L8U1 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC1.83□□□□□ -2.12
CHD9Q3L8U1 RPS3AP23-202ENST00000574601 686 ntBASIC1.83□□□□□ -2.12
CHD9Q3L8U1 AC019159.1-201ENST00000605094 187 ntBASIC1.83□□□□□ -2.12
CHD9Q3L8U1 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC1.83□□□□□ -2.12
CHD9Q3L8U1 AC129850.1-201ENST00000436203 508 ntBASIC1.83□□□□□ -2.12
CHD9Q3L8U1 PIGFP3-201ENST00000441918 722 ntBASIC1.83□□□□□ -2.12
CHD9Q3L8U1 EXTL2P1-201ENST00000446218 416 ntBASIC1.83□□□□□ -2.12
CHD9Q3L8U1 AC006390.1-201ENST00000508068 283 ntBASIC1.83□□□□□ -2.12
CHD9Q3L8U1 AC234775.3-201ENST00000564612 656 ntBASIC1.83□□□□□ -2.12
CHD9Q3L8U1 AL354943.1-201ENST00000572103 781 ntBASIC1.83□□□□□ -2.12
CHD9Q3L8U1 AC104581.2-201ENST00000572227 430 ntBASIC1.83□□□□□ -2.12
CHD9Q3L8U1 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.83□□□□□ -2.12
CHD9Q3L8U1 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.83□□□□□ -2.12
CHD9Q3L8U1 uc_338.5-201ENST00000611839 155 ntBASIC1.83□□□□□ -2.12
CHD9Q3L8U1 AC022709.1-201ENST00000615967 87 ntBASIC1.83□□□□□ -2.12
CHD9Q3L8U1 AC005336.3-201ENST00000623833 2679 ntBASIC1.83□□□□□ -2.12
CHD9Q3L8U1 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC1.82□□□□□ -2.12
CHD9Q3L8U1 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC1.82□□□□□ -2.12
CHD9Q3L8U1 TAS2R15P-201ENST00000390674 928 ntBASIC1.82□□□□□ -2.12
CHD9Q3L8U1 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC1.82□□□□□ -2.12
CHD9Q3L8U1 EIF1AXP1-201ENST00000419267 435 ntBASIC1.82□□□□□ -2.12
CHD9Q3L8U1 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC1.82□□□□□ -2.12
CHD9Q3L8U1 MTCYBP31-201ENST00000438855 1122 ntBASIC1.82□□□□□ -2.12
CHD9Q3L8U1 RPS15AP17-201ENST00000470598 390 ntBASIC1.82□□□□□ -2.12
CHD9Q3L8U1 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC1.82□□□□□ -2.12
CHD9Q3L8U1 AC074140.1-201ENST00000621617 208 ntBASIC1.82□□□□□ -2.12
CHD9Q3L8U1 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC1.82□□□□□ -2.12
CHD9Q3L8U1 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC1.82□□□□□ -2.12
CHD9Q3L8U1 RPS3AP9-201ENST00000417027 792 ntBASIC1.82□□□□□ -2.12
CHD9Q3L8U1 AC008526.1-201ENST00000509149 338 ntBASIC1.82□□□□□ -2.12
CHD9Q3L8U1 IGKV2D-36-201ENST00000518643 226 ntBASIC1.82□□□□□ -2.12
CHD9Q3L8U1 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.82□□□□□ -2.12
CHD9Q3L8U1 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC1.82□□□□□ -2.12
CHD9Q3L8U1 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.82□□□□□ -2.12
CHD9Q3L8U1 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC1.81□□□□□ -2.12
CHD9Q3L8U1 MIR1183-201ENST00000408856 89 ntBASIC1.81□□□□□ -2.12
CHD9Q3L8U1 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC1.81□□□□□ -2.12
CHD9Q3L8U1 MTND4LP16-201ENST00000440828 295 ntBASIC1.81□□□□□ -2.12
CHD9Q3L8U1 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC1.81□□□□□ -2.12
CHD9Q3L8U1 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC1.81□□□□□ -2.12
CHD9Q3L8U1 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.81□□□□□ -2.12
CHD9Q3L8U1 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
CHD9Q3L8U1 RNU6-53P-201ENST00000365367 106 ntBASIC1.81□□□□□ -2.12
CHD9Q3L8U1 POLR2J4-204ENST00000418424 324 ntBASIC1.81□□□□□ -2.12
CHD9Q3L8U1 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
CHD9Q3L8U1 AC103987.3-201ENST00000582071 292 ntBASIC1.81□□□□□ -2.12
CHD9Q3L8U1 OR5AQ1P-203ENST00000641818 1529 ntBASIC1.81□□□□□ -2.12
CHD9Q3L8U1 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC1.81□□□□□ -2.12
CHD9Q3L8U1 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.81□□□□□ -2.12
CHD9Q3L8U1 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
CHD9Q3L8U1 RNU6-60P-201ENST00000364792 103 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 SNORA68.2-201ENST00000391263 128 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 RNA5SP344-201ENST00000411081 104 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC1.8□□□□□ -2.12
CHD9Q3L8U1 XKRY2-201ENST00000442362 1093 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 AC092991.1-201ENST00000477176 376 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 AC104435.1-201ENST00000483483 166 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 RNA5SP220-201ENST00000516298 104 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.8□□□□□ -2.12
CHD9Q3L8U1 CKAP2P1-201ENST00000555477 2049 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.8□□□□□ -2.12
CHD9Q3L8U1 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
CHD9Q3L8U1 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC1.8□□□□□ -2.12
CHD9Q3L8U1 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
CHD9Q3L8U1 RNY1-201ENST00000364228 113 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 RNU2-22P-201ENST00000411266 212 ntBASIC1.8□□□□□ -2.12
CHD9Q3L8U1 BNIP3P2-201ENST00000441221 577 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 135.7 ms