Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC099669.2-201ENST00000616549 437 ntBASIC4.16□□□□□ -1.74
PTCHD3Q3KNS1 AC009268.2-201ENST00000621925 457 ntBASIC4.16□□□□□ -1.74
PTCHD3Q3KNS1 AP006248.2-201ENST00000623309 592 ntBASIC4.16□□□□□ -1.74
PTCHD3Q3KNS1 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
PTCHD3Q3KNS1 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
PTCHD3Q3KNS1 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.16□□□□□ -1.74
PTCHD3Q3KNS1 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
PTCHD3Q3KNS1 AC090229.1-201ENST00000590983 1609 ntBASIC4.16□□□□□ -1.74
PTCHD3Q3KNS1 NMD3P1-201ENST00000439704 1488 ntBASIC4.16□□□□□ -1.74
PTCHD3Q3KNS1 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
PTCHD3Q3KNS1 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PTCHD3Q3KNS1 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PTCHD3Q3KNS1 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PTCHD3Q3KNS1 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PTCHD3Q3KNS1 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PTCHD3Q3KNS1 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PTCHD3Q3KNS1 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PTCHD3Q3KNS1 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.74
PTCHD3Q3KNS1 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.74
PTCHD3Q3KNS1 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.15□□□□□ -1.74
PTCHD3Q3KNS1 AL138713.1-201ENST00000624026 2130 ntBASIC4.15□□□□□ -1.74
PTCHD3Q3KNS1 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PTCHD3Q3KNS1 AL158163.1-201ENST00000603915 1649 ntBASIC4.15□□□□□ -1.74
PTCHD3Q3KNS1 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 MIR383-201ENST00000362257 73 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 RNU6-181P-201ENST00000363225 107 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 RNA5SP366-201ENST00000365454 123 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 SNORA70C-201ENST00000384538 135 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 Y_RNA.548-201ENST00000384656 105 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AL078595.1-201ENST00000404458 226 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AL590002.1-201ENST00000406554 418 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 MIR1193-201ENST00000408109 78 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 HMGN1P24-201ENST00000412282 298 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AC069157.1-201ENST00000421749 137 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AL157831.1-201ENST00000426134 473 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AC137499.1-201ENST00000427602 88 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AL596276.1-201ENST00000434465 418 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 HLA-N-201ENST00000437516 135 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AC093156.1-201ENST00000440382 670 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 Z99127.3-201ENST00000448158 395 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 RPS3AP14-201ENST00000483907 780 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 RPL35P6-201ENST00000490024 372 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AC108475.1-201ENST00000507880 950 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AC009646.1-201ENST00000510455 318 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 RNU6-718P-201ENST00000516166 105 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 RN7SKP21-201ENST00000516503 220 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 RNU6-445P-201ENST00000516949 107 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 OR4P1P-201ENST00000530808 1136 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AL139395.1-201ENST00000603662 160 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AC112230.1-201ENST00000604342 547 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AC055876.5-201ENST00000605667 259 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 MIR98-201ENST00000606724 119 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AL391813.2-201ENST00000609113 322 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 U73479.1-201ENST00000618062 168 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AL445363.3-201ENST00000623080 671 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AC091905.1-201ENST00000624400 311 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 MIR3653-201ENST00000625572 110 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AC008013.2-202ENST00000637965 364 ntBASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.75
PTCHD3Q3KNS1 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 Z73965.1-201ENST00000623412 2297 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 Y_RNA.1-201ENST00000352915 104 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 RNY4P14-201ENST00000363656 96 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 RNU4-12P-201ENST00000365233 139 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 Y_RNA.450-201ENST00000384198 113 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 RNU6-114P-201ENST00000384704 105 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 FGFR1OP2P1-201ENST00000395943 500 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 CALM2P3-201ENST00000400429 449 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 AC022028.1-201ENST00000412054 408 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 133.6 ms