Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MIR5690-201ENST00000583739 73 ntBASIC4.87□□□□□ -1.63
RNF4P78317 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
RNF4P78317 AL669831.4-202ENST00000590817 238 ntBASIC4.87□□□□□ -1.63
RNF4P78317 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.87□□□□□ -1.63
RNF4P78317 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC4.87□□□□□ -1.63
RNF4P78317 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC4.87□□□□□ -1.63
RNF4P78317 AL670379.6-201ENST00000603753 252 ntBASIC4.87□□□□□ -1.63
RNF4P78317 AL670379.1-201ENST00000604752 252 ntBASIC4.87□□□□□ -1.63
RNF4P78317 AL670379.5-201ENST00000605253 252 ntBASIC4.87□□□□□ -1.63
RNF4P78317 AL670379.8-201ENST00000605353 252 ntBASIC4.87□□□□□ -1.63
RNF4P78317 AL158032.1-201ENST00000605401 106 ntBASIC4.87□□□□□ -1.63
RNF4P78317 AP000654.2-201ENST00000605633 586 ntBASIC4.87□□□□□ -1.63
RNF4P78317 AL670379.7-201ENST00000605823 252 ntBASIC4.87□□□□□ -1.63
RNF4P78317 AC012409.4-201ENST00000612923 249 ntBASIC4.87□□□□□ -1.63
RNF4P78317 7SK.10-201ENST00000621414 298 ntBASIC4.87□□□□□ -1.63
RNF4P78317 TTK-211ENST00000627129 240 ntTSL 5 BASIC4.87□□□□□ -1.63
RNF4P78317 MIR4496-201ENST00000635896 61 ntBASIC4.87□□□□□ -1.63
RNF4P78317 MTND5P10-201ENST00000603719 1809 ntBASIC4.87□□□□□ -1.63
RNF4P78317 MTND5P1-201ENST00000445440 1375 ntBASIC4.87□□□□□ -1.63
RNF4P78317 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
RNF4P78317 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
RNF4P78317 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.87□□□□□ -1.63
RNF4P78317 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
RNF4P78317 DDX18P3-201ENST00000404856 2007 ntBASIC4.87□□□□□ -1.63
RNF4P78317 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
RNF4P78317 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.87□□□□□ -1.63
RNF4P78317 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.87□□□□□ -1.63
RNF4P78317 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
RNF4P78317 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
RNF4P78317 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
RNF4P78317 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
RNF4P78317 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
RNF4P78317 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
RNF4P78317 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
RNF4P78317 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.86□□□□□ -1.63
RNF4P78317 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
RNF4P78317 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
RNF4P78317 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
RNF4P78317 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
RNF4P78317 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
RNF4P78317 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
RNF4P78317 AC011155.1-201ENST00000316512 456 ntBASIC4.86□□□□□ -1.63
RNF4P78317 RPL23P2-201ENST00000320371 421 ntBASIC4.86□□□□□ -1.63
RNF4P78317 Y_RNA.133-201ENST00000363428 110 ntBASIC4.86□□□□□ -1.63
RNF4P78317 SNORD116-11-201ENST00000383882 92 ntBASIC4.86□□□□□ -1.63
RNF4P78317 RNU6-463P-201ENST00000384340 107 ntBASIC4.86□□□□□ -1.63
RNF4P78317 MIR600-201ENST00000385007 98 ntBASIC4.86□□□□□ -1.63
RNF4P78317 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
RNF4P78317 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC4.86□□□□□ -1.63
RNF4P78317 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC4.86□□□□□ -1.63
RNF4P78317 AC079809.1-201ENST00000415468 276 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AL139095.3-201ENST00000419672 1203 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC4.86□□□□□ -1.63
RNF4P78317 RPL7AP49-201ENST00000429522 581 ntBASIC4.86□□□□□ -1.63
RNF4P78317 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC4.86□□□□□ -1.63
RNF4P78317 AL591438.1-201ENST00000433508 581 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AL161722.2-201ENST00000434731 981 ntBASIC4.86□□□□□ -1.63
RNF4P78317 IPO7P1-201ENST00000442031 636 ntBASIC4.86□□□□□ -1.63
RNF4P78317 ELOCP24-201ENST00000456370 334 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC4.86□□□□□ -1.63
RNF4P78317 AC009127.1-201ENST00000467090 155 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AC010631.1-201ENST00000474150 156 ntBASIC4.86□□□□□ -1.63
RNF4P78317 RPS18P6-201ENST00000476880 458 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AC008953.1-201ENST00000497334 318 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AC006427.1-201ENST00000514359 712 ntBASIC4.86□□□□□ -1.63
RNF4P78317 RNU6-1137P-201ENST00000517073 99 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AC100870.1-201ENST00000522035 505 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AP003385.6-201ENST00000531603 374 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC4.86□□□□□ -1.63
RNF4P78317 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.86□□□□□ -1.63
RNF4P78317 MIR3936-201ENST00000584304 110 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.86□□□□□ -1.63
RNF4P78317 AL355812.1-201ENST00000603215 216 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AC006254.3-201ENST00000603353 884 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AC013244.1-201ENST00000604279 193 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AL121612.2-201ENST00000612261 482 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AL157817.1-201ENST00000614264 790 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AL132822.1-201ENST00000617063 513 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AL445363.3-201ENST00000623080 671 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AC110801.1-201ENST00000623590 212 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.86□□□□□ -1.63
RNF4P78317 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.86□□□□□ -1.63
RNF4P78317 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.86□□□□□ -1.63
RNF4P78317 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
RNF4P78317 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
RNF4P78317 ZNF519P1-201ENST00000449011 1626 ntBASIC4.86□□□□□ -1.63
RNF4P78317 EFTUD1P2-201ENST00000514817 1603 ntBASIC4.86□□□□□ -1.63
RNF4P78317 AP001029.2-203ENST00000589795 4910 ntBASIC4.86□□□□□ -1.63
RNF4P78317 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.86□□□□□ -1.63
RNF4P78317 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
RNF4P78317 AC107027.3-201ENST00000565095 3473 ntBASIC4.85□□□□□ -1.63
RNF4P78317 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.85□□□□□ -1.63
RNF4P78317 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
RNF4P78317 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
RNF4P78317 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
RNF4P78317 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
RNF4P78317 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
RNF4P78317 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
RNF4P78317 U3.3-201ENST00000362986 216 ntBASIC4.85□□□□□ -1.63
RNF4P78317 Y_RNA.148-201ENST00000363557 117 ntBASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 128.7 ms