Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXC9P31274 VN1R10P-201ENST00000447106 875 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.07□□□□□ -1.76
HOXC9P31274 SLC31A1P1-201ENST00000451221 567 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXC9P31274 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXC9P31274 AC093534.1-201ENST00000504977 132 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 VN1R104P-201ENST00000505115 1009 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXC9P31274 MTCYBP37-201ENST00000510642 1133 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC4.07□□□□□ -1.76
HOXC9P31274 RN7SKP277-201ENST00000516895 283 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 OR5AK1P-201ENST00000524837 922 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 AC135001.1-201ENST00000544546 283 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 AC008127.2-201ENST00000549925 1075 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXC9P31274 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXC9P31274 IGKV1OR2-6-201ENST00000603485 277 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 AL592221.1-201ENST00000605266 382 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 AC018638.7-201ENST00000605836 1114 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXC9P31274 AC245297.2-201ENST00000610119 565 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 AL360219.1-201ENST00000610230 366 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 AC004908.3-201ENST00000610248 625 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 AC068722.2-201ENST00000618734 544 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 AC092650.2-201ENST00000619984 902 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXC9P31274 AL590240.3-201ENST00000621416 943 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 AC103706.2-201ENST00000638080 240 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 FAM157B-203ENST00000639350 358 ntBASIC4.07□□□□□ -1.76
HOXC9P31274 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
HOXC9P31274 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
HOXC9P31274 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXC9P31274 SNRPEP3-201ENST00000338402 276 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 SNORA4.1-201ENST00000364263 144 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 CASP3-203ENST00000393588 677 ntTSL 4 BASIC4.06□□□□□ -1.76
HOXC9P31274 AC110754.1-201ENST00000399740 601 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 AL590084.2-201ENST00000401481 382 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 BTBD10P2-201ENST00000404779 676 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 MIR1284-201ENST00000408337 120 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 AC098592.1-201ENST00000419352 333 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 AC234781.2-201ENST00000426370 994 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXC9P31274 YWHAZP7-201ENST00000436906 631 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 AC092427.1-201ENST00000439177 601 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 RPL23AP16-201ENST00000441715 421 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXC9P31274 BX276092.4-201ENST00000452056 248 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 RNU7-125P-201ENST00000458760 62 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 RPS4XP22-201ENST00000480755 780 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 LINC00888-204ENST00000487386 421 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXC9P31274 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXC9P31274 RN7SKP132-201ENST00000516001 208 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 ZNF705CP-201ENST00000530515 889 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
HOXC9P31274 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXC9P31274 AC125611.1-201ENST00000549563 229 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC4.06□□□□□ -1.76
HOXC9P31274 GTF3AP2-201ENST00000557014 266 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.06□□□□□ -1.76
HOXC9P31274 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC4.06□□□□□ -1.76
HOXC9P31274 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXC9P31274 HSPA8P1-201ENST00000425843 1833 ntBASIC4.06□□□□□ -1.76
HOXC9P31274 AL365361.1-201ENST00000566942 3481 ntBASIC4.05□□□□□ -1.76
HOXC9P31274 AL136964.1-201ENST00000622038 2990 ntBASIC4.05□□□□□ -1.76
HOXC9P31274 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
HOXC9P31274 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.05□□□□□ -1.76
HOXC9P31274 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXC9P31274 RNU6-1200P-201ENST00000384162 107 ntBASIC4.05□□□□□ -1.76
HOXC9P31274 MIR506-201ENST00000384998 124 ntBASIC4.05□□□□□ -1.76
HOXC9P31274 AL022400.1-201ENST00000423946 935 ntBASIC4.05□□□□□ -1.76
HOXC9P31274 UBE2D3P1-201ENST00000436669 444 ntBASIC4.05□□□□□ -1.76
HOXC9P31274 RPL18AP17-201ENST00000455326 198 ntBASIC4.05□□□□□ -1.76
HOXC9P31274 RPS4XP13-201ENST00000483219 789 ntBASIC4.05□□□□□ -1.76
HOXC9P31274 NCOR1P1-202ENST00000486162 291 ntBASIC4.05□□□□□ -1.76
HOXC9P31274 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXC9P31274 AC147055.4-201ENST00000504399 745 ntBASIC4.05□□□□□ -1.76
HOXC9P31274 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXC9P31274 RN7SKP272-201ENST00000516988 232 ntBASIC4.05□□□□□ -1.76
HOXC9P31274 AL389895.1-201ENST00000554127 252 ntBASIC4.05□□□□□ -1.76
HOXC9P31274 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXC9P31274 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXC9P31274 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXC9P31274 AC106791.2-201ENST00000604680 391 ntBASIC4.05□□□□□ -1.76
HOXC9P31274 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
HOXC9P31274 MTCO1P14-201ENST00000441695 1559 ntBASIC4.05□□□□□ -1.76
HOXC9P31274 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXC9P31274 AC007496.3-201ENST00000624987 3443 ntBASIC4.05□□□□□ -1.76
HOXC9P31274 AC027287.1-201ENST00000553115 1453 ntBASIC4.05□□□□□ -1.76
HOXC9P31274 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXC9P31274 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXC9P31274 ZNF37BP-203ENST00000452306 1352 ntBASIC4.04□□□□□ -1.76
HOXC9P31274 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXC9P31274 RPL23AP29-201ENST00000397284 453 ntBASIC4.04□□□□□ -1.76
HOXC9P31274 USP9YP33-201ENST00000412220 421 ntBASIC4.04□□□□□ -1.76
HOXC9P31274 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXC9P31274 TEX41-202ENST00000414256 604 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXC9P31274 USP9YP26-201ENST00000421008 661 ntBASIC4.04□□□□□ -1.76
HOXC9P31274 OR51AB1P-201ENST00000429046 620 ntBASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 177.1 ms