Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC2.64□□□□□ -1.99
USF1P22415 POU5F1P7-201ENST00000508759 541 ntBASIC2.64□□□□□ -1.99
USF1P22415 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC2.64□□□□□ -1.99
USF1P22415 AC009812.2-201ENST00000517657 457 ntBASIC2.64□□□□□ -1.99
USF1P22415 AC023632.1-201ENST00000518463 375 ntBASIC2.64□□□□□ -1.99
USF1P22415 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.64□□□□□ -1.99
USF1P22415 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
USF1P22415 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
USF1P22415 REXO2-218ENST00000544827 880 ntTSL 3 BASIC2.64□□□□□ -1.99
USF1P22415 AC090502.2-201ENST00000549267 280 ntBASIC2.64□□□□□ -1.99
USF1P22415 AC044913.1-201ENST00000557200 430 ntBASIC2.64□□□□□ -1.99
USF1P22415 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.64□□□□□ -1.99
USF1P22415 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC2.64□□□□□ -1.99
USF1P22415 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
USF1P22415 AC090330.1-201ENST00000588646 764 ntBASIC2.64□□□□□ -1.99
USF1P22415 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.64□□□□□ -1.99
USF1P22415 AC009220.3-201ENST00000604318 586 ntBASIC2.64□□□□□ -1.99
USF1P22415 AC092954.1-201ENST00000609121 445 ntBASIC2.64□□□□□ -1.99
USF1P22415 AC106028.5-201ENST00000610332 395 ntBASIC2.64□□□□□ -1.99
USF1P22415 AL591516.1-201ENST00000611326 274 ntBASIC2.64□□□□□ -1.99
USF1P22415 AC131902.3-201ENST00000611767 581 ntBASIC2.64□□□□□ -1.99
USF1P22415 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
USF1P22415 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.64□□□□□ -1.99
USF1P22415 AC006111.3-201ENST00000622137 383 ntBASIC2.64□□□□□ -1.99
USF1P22415 AL353748.2-201ENST00000622148 471 ntBASIC2.64□□□□□ -1.99
USF1P22415 AC068880.4-201ENST00000623082 495 ntBASIC2.64□□□□□ -1.99
USF1P22415 AC080188.3-201ENST00000624842 748 ntBASIC2.64□□□□□ -1.99
USF1P22415 AC090740.1-201ENST00000623193 2262 ntBASIC2.64□□□□□ -1.99
USF1P22415 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC2.64□□□□□ -1.99
USF1P22415 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
USF1P22415 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.64□□□□□ -1.99
USF1P22415 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.64□□□□□ -1.99
USF1P22415 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
USF1P22415 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
USF1P22415 AC103988.1-201ENST00000566382 2177 ntBASIC2.63□□□□□ -1.99
USF1P22415 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
USF1P22415 NFIB-202ENST00000380924 840 ntTSL 5 BASIC2.63□□□□□ -1.99
USF1P22415 AL355615.1-201ENST00000406187 641 ntBASIC2.63□□□□□ -1.99
USF1P22415 RPS15AP38-201ENST00000413110 372 ntBASIC2.63□□□□□ -1.99
USF1P22415 AC006960.1-201ENST00000419980 153 ntBASIC2.63□□□□□ -1.99
USF1P22415 USP9YP36-201ENST00000424581 829 ntBASIC2.63□□□□□ -1.99
USF1P22415 MTATP6P4-201ENST00000427725 675 ntBASIC2.63□□□□□ -1.99
USF1P22415 AC104332.2-201ENST00000429959 156 ntBASIC2.63□□□□□ -1.99
USF1P22415 RPL21P2-201ENST00000440049 481 ntBASIC2.63□□□□□ -1.99
USF1P22415 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC2.63□□□□□ -1.99
USF1P22415 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC2.63□□□□□ -1.99
USF1P22415 AC013828.1-201ENST00000481845 158 ntBASIC2.63□□□□□ -1.99
USF1P22415 DYNLL1P6-201ENST00000503440 264 ntBASIC2.63□□□□□ -1.99
USF1P22415 snoZ278.1-201ENST00000517059 112 ntBASIC2.63□□□□□ -1.99
USF1P22415 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.63□□□□□ -1.99
USF1P22415 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC2.63□□□□□ -1.99
USF1P22415 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC2.63□□□□□ -1.99
USF1P22415 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
USF1P22415 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC2.63□□□□□ -1.99
USF1P22415 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC2.63□□□□□ -1.99
USF1P22415 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.63□□□□□ -1.99
USF1P22415 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC2.63□□□□□ -1.99
USF1P22415 CYB5AP5-201ENST00000549779 389 ntBASIC2.63□□□□□ -1.99
USF1P22415 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC2.63□□□□□ -1.99
USF1P22415 AP005205.1-201ENST00000563503 508 ntBASIC2.63□□□□□ -1.99
USF1P22415 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC2.63□□□□□ -1.99
USF1P22415 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC2.63□□□□□ -1.99
USF1P22415 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.63□□□□□ -1.99
USF1P22415 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC2.63□□□□□ -1.99
USF1P22415 AC008759.3-201ENST00000613300 508 ntBASIC2.63□□□□□ -1.99
USF1P22415 uc_338.25-201ENST00000613756 156 ntBASIC2.63□□□□□ -1.99
USF1P22415 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.63□□□□□ -1.99
USF1P22415 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC2.63□□□□□ -1.99
USF1P22415 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC2.63□□□□□ -1.99
USF1P22415 AC090897.3-201ENST00000636973 1157 ntBASIC2.63□□□□□ -1.99
USF1P22415 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.63□□□□□ -1.99
USF1P22415 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
USF1P22415 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
USF1P22415 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
USF1P22415 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
USF1P22415 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC2.62□□□□□ -1.99
USF1P22415 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC2.62□□□□□ -1.99
USF1P22415 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
USF1P22415 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.62□□□□□ -1.99
USF1P22415 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
USF1P22415 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.62□□□□□ -1.99
USF1P22415 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.62□□□□□ -1.99
USF1P22415 AP002907.1-201ENST00000606361 1430 ntBASIC2.62□□□□□ -1.99
USF1P22415 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.62□□□□□ -1.99
USF1P22415 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
USF1P22415 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
USF1P22415 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
USF1P22415 RNU6-173P-201ENST00000364215 104 ntBASIC2.62□□□□□ -1.99
USF1P22415 AL035405.1-201ENST00000400795 710 ntBASIC2.62□□□□□ -1.99
USF1P22415 RNU2-28P-201ENST00000410457 189 ntBASIC2.62□□□□□ -1.99
USF1P22415 RNU2-15P-201ENST00000410692 191 ntBASIC2.62□□□□□ -1.99
USF1P22415 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.62□□□□□ -1.99
USF1P22415 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC2.62□□□□□ -1.99
USF1P22415 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.62□□□□□ -1.99
USF1P22415 AC092393.1-201ENST00000439625 742 ntBASIC2.62□□□□□ -1.99
USF1P22415 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
USF1P22415 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC2.62□□□□□ -1.99
USF1P22415 AC112492.1-201ENST00000449607 712 ntBASIC2.62□□□□□ -1.99
USF1P22415 MRPL42P4-201ENST00000453267 443 ntBASIC2.62□□□□□ -1.99
USF1P22415 ST13P14-201ENST00000474095 734 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms