Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 KATNBL1P3-201ENST00000443475 909 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 MTND2P4-201ENST00000445034 1004 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD4P09016 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXD4P09016 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD4P09016 RPS27AP8-201ENST00000452665 445 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 BX510359.1-201ENST00000456973 237 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXD4P09016 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXD4P09016 RN7SL807P-201ENST00000470923 297 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 AC087312.1-201ENST00000471411 480 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 RPS4XP22-201ENST00000480755 780 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 OR4G11P-201ENST00000492842 939 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXD4P09016 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXD4P09016 HMGB1P28-201ENST00000507778 552 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.24□□□□□ -1.89
HOXD4P09016 OR5BM1P-201ENST00000512021 366 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD4P09016 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
HOXD4P09016 AC104057.1-201ENST00000515547 497 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 RN7SKP57-201ENST00000517248 293 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXD4P09016 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXD4P09016 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXD4P09016 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD4P09016 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXD4P09016 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD4P09016 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.24□□□□□ -1.89
HOXD4P09016 AC007687.1-201ENST00000602704 304 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 AC010738.1-201ENST00000604970 987 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 AP001521.1-201ENST00000609150 300 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 AC122133.1-201ENST00000613964 233 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 AC008083.4-201ENST00000615076 444 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 AL355365.1-201ENST00000616480 294 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 AC009090.3-201ENST00000616553 565 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
HOXD4P09016 AC098679.5-201ENST00000624394 571 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 AC091905.1-201ENST00000624400 311 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXD4P09016 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXD4P09016 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD4P09016 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD4P09016 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.24□□□□□ -1.89
HOXD4P09016 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXD4P09016 AF127577.6-201ENST00000623352 2191 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD4P09016 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXD4P09016 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD4P09016 RNU6-216P-201ENST00000363282 104 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 RNU6-921P-201ENST00000384361 107 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 MIR490-201ENST00000384865 128 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 RPL23AP29-201ENST00000397284 453 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 AL021407.1-201ENST00000404531 386 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 MIR1284-201ENST00000408337 120 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 AC073264.1-201ENST00000411508 416 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 EI24P1-201ENST00000416584 867 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXD4P09016 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXD4P09016 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD4P09016 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXD4P09016 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
HOXD4P09016 SLC31A1P1-201ENST00000451221 567 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXD4P09016 AC097262.1-201ENST00000452559 548 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXD4P09016 RPL18AP17-201ENST00000455326 198 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 RPS20P32-201ENST00000456044 356 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 SYPL1P1-201ENST00000473622 768 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 RPS29P2-201ENST00000479278 136 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 AC013828.1-201ENST00000481845 158 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 AC093281.2-201ENST00000510153 597 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 AC005921.1-201ENST00000510589 286 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXD4P09016 RNU6-579P-201ENST00000516879 102 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXD4P09016 ARL2BPP5-201ENST00000523141 481 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 OR5AK1P-201ENST00000524837 922 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 AC007458.1-201ENST00000542812 373 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXD4P09016 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXD4P09016 NCAPGP2-201ENST00000557911 754 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 AL512347.1-201ENST00000566420 503 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXD4P09016 AC074051.3-201ENST00000570238 358 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXD4P09016 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXD4P09016 AC010928.3-201ENST00000587712 541 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.23□□□□□ -1.89
HOXD4P09016 AP000811.1-201ENST00000603803 651 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 AL009028.1-201ENST00000604895 802 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 AC069304.2-201ENST00000605154 435 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXD4P09016 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXD4P09016 U73479.1-201ENST00000618062 168 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 AC079684.1-201ENST00000621405 437 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 AF246928.1-201ENST00000623768 87 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXD4P09016 MFSD8-233ENST00000641482 4860 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 146.6 ms