Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 Y_RNA.128-201ENST00000363391 112 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 Y_RNA.339-201ENST00000365325 102 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
HOXA3O43365 RNU6-1297P-201ENST00000384415 104 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 SNORA70E-201ENST00000384492 135 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 CYB5AP4-201ENST00000396692 399 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 AL592114.1-201ENST00000403842 483 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA3O43365 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA3O43365 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA3O43365 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA3O43365 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA3O43365 RPS3AP52-201ENST00000435639 297 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 RHOT1P3-201ENST00000436571 331 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXA3O43365 KNOP1P3-201ENST00000446933 426 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA3O43365 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA3O43365 AC004801.2-202ENST00000463559 283 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA3O43365 RN7SL591P-201ENST00000496150 292 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 IGBP1P4-201ENST00000503202 879 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 MTND5P5-201ENST00000503764 376 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA3O43365 RNU6-1088P-201ENST00000516850 104 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 AC022360.1-201ENST00000521058 340 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.12□□□□□ -1.75
HOXA3O43365 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.12□□□□□ -1.75
HOXA3O43365 AC008033.2-201ENST00000542626 177 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA3O43365 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA3O43365 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXA3O43365 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXA3O43365 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.12□□□□□ -1.75
HOXA3O43365 AC006272.2-201ENST00000594725 163 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 BNIP3P25-201ENST00000596023 559 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 AL031320.1-201ENST00000604177 357 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 AP001836.1-201ENST00000604675 523 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 AC245389.1-201ENST00000605141 529 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 AC084781.2-201ENST00000615568 161 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
HOXA3O43365 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXA3O43365 DDX10P1-201ENST00000448545 1933 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
HOXA3O43365 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXA3O43365 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXA3O43365 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXA3O43365 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXA3O43365 AC121333.1-201ENST00000567488 2709 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC4.12□□□□□ -1.75
HOXA3O43365 AC027290.2-201ENST00000623210 18662 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXA3O43365 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HOXA3O43365 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.12□□□□□ -1.75
HOXA3O43365 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
HOXA3O43365 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
HOXA3O43365 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA3O43365 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 AC011755.1-201ENST00000623763 2049 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 TPTE2P4-201ENST00000258589 1605 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA3O43365 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
HOXA3O43365 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA3O43365 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
HOXA3O43365 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 AC006206.1-201ENST00000544842 3387 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 XIAPP3-201ENST00000312918 795 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 RNU6-82P-201ENST00000363970 107 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 RNA5SP428-201ENST00000365129 132 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 RNU6-474P-201ENST00000384243 107 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 MIR559-201ENST00000385188 96 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 RNU4-14P-201ENST00000410858 122 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 RNU6-387P-201ENST00000411331 105 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 OFD1P1Y-201ENST00000411756 1225 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 RPL30P2-201ENST00000414021 291 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 RPL26P29-201ENST00000415623 438 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC4.11□□□□□ -1.75
HOXA3O43365 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA3O43365 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXA3O43365 ATP5HP2-201ENST00000433885 485 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXA3O43365 RPL34P20-201ENST00000442771 351 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXA3O43365 AL162389.1-201ENST00000449233 177 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AC116533.1-201ENST00000459748 321 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 VN1R17P-201ENST00000472048 1090 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AC006463.2-201ENST00000473326 348 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AC010631.1-201ENST00000474150 156 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AC027575.1-201ENST00000481064 460 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 RN7SL432P-201ENST00000484057 298 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms