Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 AC116667.1-201ENST00000604855 2072 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 MTND5P9-201ENST00000503854 1755 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 SNORA63.4-201ENST00000362763 126 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 Y_RNA.275-201ENST00000364726 110 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 AC005042.1-201ENST00000393397 800 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 AL109941.1-201ENST00000401925 229 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 RNU6-651P-201ENST00000411040 105 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 DPPA2P2-201ENST00000418220 897 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 AC104073.1-201ENST00000451988 151 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 RPS23P2-201ENST00000463671 415 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 RN7SL329P-201ENST00000467740 299 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 Y_RNA.689-201ENST00000516589 107 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 AP006245.2-201ENST00000522004 300 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 AC126177.5-201ENST00000549599 178 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 MIR5696-201ENST00000578474 85 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 AC174048.1-201ENST00000603389 144 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 AL352984.2-202ENST00000613699 155 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 SNHG22-203ENST00000617833 660 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 AC233981.2-201ENST00000611524 1614 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 OR52B5P-204ENST00000641744 3467 ntBASIC7.8□□□□□ -1.16
CCDC61Q9Y6R9 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 RNU6-80P-201ENST00000384195 107 ntBASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 AL358176.3-201ENST00000420757 454 ntBASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 AC079168.2-201ENST00000453977 416 ntBASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 AC072052.1-201ENST00000496556 306 ntBASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 MEG8-215ENST00000555354 469 ntTSL 3 BASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 MIR4308-201ENST00000580634 81 ntBASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 AC006115.2-201ENST00000596823 202 ntBASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 U1.31-201ENST00000620022 160 ntBASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 AC093849.1-201ENST00000563631 2209 ntBASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC61Q9Y6R9 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 AC005224.3-201ENST00000584683 2140 ntBASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 Y_RNA.71-201ENST00000362892 104 ntBASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 AL645927.1-201ENST00000396783 406 ntBASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 RNU6ATAC18P-201ENST00000408413 101 ntBASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 AL353691.1-201ENST00000451332 387 ntBASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 RN7SL826P-201ENST00000479724 288 ntBASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 AC012123.2-201ENST00000485809 248 ntBASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 RNY3P16-201ENST00000516338 101 ntBASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 AC007458.1-201ENST00000542812 373 ntBASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 DPPA3P2-201ENST00000553589 478 ntBASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 MIR3684-201ENST00000579779 74 ntBASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 AC006077.1-201ENST00000604746 343 ntBASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 AC000068.2-201ENST00000608816 460 ntBASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 AC240442.1-201ENST00000616055 283 ntBASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC7.78□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms