Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC010329.2-201ENST00000595195 2737 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AL157777.2-201ENST00000258070 137 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 RNU1-108P-201ENST00000362556 161 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 Y_RNA.100-201ENST00000363141 102 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 RNU6-108P-201ENST00000365558 107 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 RNU6-1062P-201ENST00000383908 107 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 MRPL42P3-201ENST00000401492 326 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AC019097.1-201ENST00000424783 735 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AC008267.5-201ENST00000424928 265 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AL669831.1-202ENST00000428504 417 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AC004938.1-201ENST00000438468 308 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 FAM103A2P-201ENST00000444122 354 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AC073850.1-201ENST00000449243 255 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AC005229.2-201ENST00000456995 399 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 RN7SL727P-201ENST00000482164 296 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 RPS27P23-201ENST00000487608 251 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AC106872.2-201ENST00000494303 480 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AC140172.1-201ENST00000502928 141 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 RNU6-347P-201ENST00000516658 105 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 RNU6-201P-201ENST00000517100 61 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AP003072.2-201ENST00000527756 676 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 RGS4-209ENST00000531057 544 ntTSL 4 BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AC011468.4-201ENST00000603942 409 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AC013244.1-201ENST00000604279 193 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AC004696.1-201ENST00000614345 607 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 FAM157A-202ENST00000615155 405 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AP002799.1-201ENST00000623552 423 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 AC010149.2-201ENST00000637608 315 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 C4BPAP1-201ENST00000415474 1893 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 ARHGAP42P1-201ENST00000507474 1976 ntBASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC39Q9UFE4 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 ASNSP3-201ENST00000451989 1306 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 OFD1P5Y-201ENST00000447585 2590 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 EFTUD1P2-201ENST00000514817 1603 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 RNA5SP305-201ENST00000362665 119 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 SNORA70-201ENST00000384436 135 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 UQCRBP1-201ENST00000421129 336 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AC104837.2-201ENST00000427236 424 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 RPL23AP30-201ENST00000432419 501 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AC093414.1-201ENST00000434712 514 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AC092013.1-201ENST00000438795 332 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 H2AFZP6-201ENST00000444403 394 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AC104651.2-201ENST00000447549 528 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AC000111.2-201ENST00000448200 210 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AC073415.1-201ENST00000449240 153 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 RPL7P15-201ENST00000461190 712 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AC104564.1-201ENST00000493028 407 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AC008953.1-201ENST00000497334 318 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 Y_RNA.665-201ENST00000516177 98 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AC009812.2-201ENST00000517657 457 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 RANP9-201ENST00000519957 271 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AC123786.2-201ENST00000603459 275 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 BX664608.1-201ENST00000610519 487 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AL512624.1-201ENST00000613638 469 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 USP44-208ENST00000552440 1818 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 MTND5P10-201ENST00000603719 1809 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 RNF6P1-201ENST00000444889 1784 ntBASIC5.5□□□□□ -1.53
CCDC39Q9UFE4 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms