Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 Z75741.1-201ENST00000446793 314 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.6□□□□□ -1.83
USP28Q96RU2 PDSS1P2-201ENST00000449397 678 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 ELOCP23-201ENST00000452014 332 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 AL122001.1-201ENST00000457027 370 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC3.6□□□□□ -1.83
USP28Q96RU2 RPL21P10-201ENST00000463521 490 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 BET1P1-201ENST00000482276 359 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.6□□□□□ -1.83
USP28Q96RU2 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
USP28Q96RU2 AP003461.1-201ENST00000528866 78 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 AC005832.3-201ENST00000537929 631 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.6□□□□□ -1.83
USP28Q96RU2 UBE2NP1-201ENST00000545592 458 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC3.6□□□□□ -1.83
USP28Q96RU2 SYF2P1-201ENST00000550658 413 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.6□□□□□ -1.83
USP28Q96RU2 AC008015.1-201ENST00000555505 465 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.6□□□□□ -1.83
USP28Q96RU2 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.6□□□□□ -1.83
USP28Q96RU2 AL031281.1-201ENST00000604049 488 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 HSPE1P14-201ENST00000605812 302 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.6□□□□□ -1.83
USP28Q96RU2 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC3.6□□□□□ -1.83
USP28Q96RU2 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
USP28Q96RU2 ZNF37BP-203ENST00000452306 1352 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 AC116096.1-201ENST00000566804 2314 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
USP28Q96RU2 AP001350.1-201ENST00000601906 1524 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
USP28Q96RU2 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
USP28Q96RU2 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.59□□□□□ -1.83
USP28Q96RU2 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
USP28Q96RU2 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC3.59□□□□□ -1.83
USP28Q96RU2 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
USP28Q96RU2 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.59□□□□□ -1.83
USP28Q96RU2 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.59□□□□□ -1.83
USP28Q96RU2 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.59□□□□□ -1.83
USP28Q96RU2 RPL21P66-201ENST00000426566 466 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 OR2AS1P-201ENST00000427827 319 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC3.59□□□□□ -1.83
USP28Q96RU2 AL353705.1-201ENST00000433468 480 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 MTND5P2-201ENST00000442927 1142 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 Z83846.1-201ENST00000446798 265 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 Z99714.1-201ENST00000450463 807 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 HMGN2P16-201ENST00000456802 261 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 RNU7-125P-201ENST00000458760 62 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 SYPL1P1-201ENST00000473622 768 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.59□□□□□ -1.83
USP28Q96RU2 AC079395.1-201ENST00000510981 262 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 AC010486.3-201ENST00000511602 785 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.59□□□□□ -1.83
USP28Q96RU2 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.59□□□□□ -1.83
USP28Q96RU2 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.59□□□□□ -1.83
USP28Q96RU2 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.59□□□□□ -1.83
USP28Q96RU2 AP004371.1-201ENST00000525240 214 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.59□□□□□ -1.83
USP28Q96RU2 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.59□□□□□ -1.83
USP28Q96RU2 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.59□□□□□ -1.83
USP28Q96RU2 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.59□□□□□ -1.83
USP28Q96RU2 AL845331.3-202ENST00000562856 261 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 AC138915.2-201ENST00000569776 97 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.59□□□□□ -1.83
USP28Q96RU2 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.59□□□□□ -1.83
USP28Q96RU2 AC004223.2-201ENST00000590309 544 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.59□□□□□ -1.83
USP28Q96RU2 AL109653.1-201ENST00000603091 248 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 AC011816.2-201ENST00000607089 556 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 PLCE1P1-201ENST00000622094 305 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 AC004777.1-201ENST00000624317 287 ntBASIC3.59□□□□□ -1.83
USP28Q96RU2 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.59□□□□□ -1.84
USP28Q96RU2 AC092326.2-201ENST00000624772 1561 ntBASIC3.59□□□□□ -1.84
USP28Q96RU2 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
USP28Q96RU2 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
USP28Q96RU2 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
USP28Q96RU2 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.58□□□□□ -1.84
USP28Q96RU2 RNU6-1181P-201ENST00000384191 106 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 MIR591-201ENST00000385290 95 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 AC068533.2-201ENST00000411872 306 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 AC245054.2-201ENST00000415639 319 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.58□□□□□ -1.84
USP28Q96RU2 TXNL1P1-201ENST00000429528 554 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 NEK4P1-201ENST00000433383 879 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC3.58□□□□□ -1.84
USP28Q96RU2 AL445567.1-201ENST00000439121 144 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 AC108734.1-201ENST00000439549 399 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 RPS26P56-201ENST00000444468 240 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 NDUFA5P7-201ENST00000452914 242 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC3.58□□□□□ -1.84
USP28Q96RU2 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.58□□□□□ -1.84
USP28Q96RU2 WBP1LP4-201ENST00000505043 344 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.58□□□□□ -1.84
USP28Q96RU2 AC117522.2-201ENST00000510049 657 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.58□□□□□ -1.84
USP28Q96RU2 AC010587.2-201ENST00000511727 448 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 SNORA48.10-201ENST00000516965 160 ntBASIC3.58□□□□□ -1.84
USP28Q96RU2 RNU6-1073P-201ENST00000517182 106 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms