Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC005336.3-201ENST00000623833 2679 ntBASIC2.77□□□□□ -1.97
CCDC112Q8NEF3 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 MTND5P28-201ENST00000438005 1594 ntBASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 RNA5SP80-201ENST00000410475 111 ntBASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 NUP35P1-201ENST00000422734 947 ntBASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 RPS6P14-201ENST00000425165 719 ntBASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 RPL36P19-201ENST00000430744 301 ntBASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 RN7SL432P-201ENST00000484057 298 ntBASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 AC017037.2-201ENST00000513850 890 ntBASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 SMILR-201ENST00000533992 553 ntTSL 4 BASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 AC008687.2-201ENST00000597865 520 ntBASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 XIAPP1-201ENST00000603162 600 ntBASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 AC245100.7-201ENST00000609678 442 ntBASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 AC095031.1-201ENST00000623685 672 ntBASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC112Q8NEF3 AC016716.1-201ENST00000265882 708 ntBASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 RNA5SP393-201ENST00000363423 117 ntBASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 RNU6-799P-201ENST00000363567 107 ntBASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 RNU1-112P-201ENST00000364401 164 ntBASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 RNU6-1027P-201ENST00000383998 107 ntBASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 MIR196B-201ENST00000384852 84 ntBASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 RPS4XP8-201ENST00000402039 771 ntBASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 FO393413.1-201ENST00000402892 195 ntBASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 AL512504.1-201ENST00000415494 778 ntBASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 AL139413.1-201ENST00000421309 217 ntBASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 AL606495.1-201ENST00000422100 813 ntBASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 MRPS33P4-201ENST00000434892 317 ntBASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 ZNF736P6Y-201ENST00000447526 1213 ntBASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 AC133963.2-201ENST00000513686 578 ntBASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 ERHP1-201ENST00000523006 310 ntBASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 AL390838.2-201ENST00000602394 274 ntBASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC112Q8NEF3 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 RPL21P132-201ENST00000331267 462 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 AC062016.1-201ENST00000355719 319 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 MIR449A-201ENST00000362113 91 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 SNORA18.3-201ENST00000384122 132 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 MIR9-1-201ENST00000385198 89 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 SFR1P1-201ENST00000403720 688 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 RNA5SP56-201ENST00000410277 118 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 HMGN2P30-201ENST00000423237 256 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 AC234775.1-201ENST00000454247 670 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 AC008565.1-201ENST00000509046 885 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 SNORA31.21-201ENST00000517180 77 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 AP003467.2-201ENST00000520175 319 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 AC243972.3-201ENST00000539655 198 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 ADAM3B-201ENST00000569937 840 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 AL669831.4-202ENST00000590817 238 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 VN1R90P-201ENST00000595717 726 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 AC022387.2-201ENST00000604050 448 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 AC009220.3-201ENST00000604318 586 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 AC106791.2-201ENST00000604680 391 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 AL133507.1-201ENST00000605269 557 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 ZNF90P1-201ENST00000480493 1951 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 AC012321.1-201ENST00000561622 1588 ntBASIC2.74□□□□□ -1.97
CCDC112Q8NEF3 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC112Q8NEF3 AC091564.4-201ENST00000533934 2194 ntBASIC2.73□□□□□ -1.97
CCDC112Q8NEF3 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC2.73□□□□□ -1.97
CCDC112Q8NEF3 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC112Q8NEF3 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC112Q8NEF3 RNA5SP456-201ENST00000364002 114 ntBASIC2.73□□□□□ -1.97
CCDC112Q8NEF3 RNU6-301P-201ENST00000384277 107 ntBASIC2.73□□□□□ -1.97
CCDC112Q8NEF3 RNA5SP252-201ENST00000391131 119 ntBASIC2.73□□□□□ -1.97
CCDC112Q8NEF3 AL445529.1-201ENST00000398713 389 ntBASIC2.73□□□□□ -1.97
CCDC112Q8NEF3 DSTNP4-201ENST00000399472 474 ntBASIC2.73□□□□□ -1.97
CCDC112Q8NEF3 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.73□□□□□ -1.97
CCDC112Q8NEF3 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC112Q8NEF3 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC112Q8NEF3 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC112Q8NEF3 HSFY3P-201ENST00000444242 1191 ntBASIC2.73□□□□□ -1.97
CCDC112Q8NEF3 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC112Q8NEF3 AL031183.1-201ENST00000457667 207 ntBASIC2.73□□□□□ -1.97
CCDC112Q8NEF3 RNA5SP310-201ENST00000459084 116 ntBASIC2.73□□□□□ -1.97
CCDC112Q8NEF3 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms