Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC005332.6-201ENST00000613178 446 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AC012314.7-201ENST00000619693 93 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AC010872.1-201ENST00000624225 675 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 AC005832.2-201ENST00000538921 1430 ntBASIC3.19□□□□□ -1.9
ZNF540Q8NDQ6 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 ANKRD36P1-201ENST00000344424 659 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 RNA5SP124-201ENST00000362739 110 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 U8.11-201ENST00000384699 133 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 U8.12-201ENST00000384701 133 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 SNRPEP2-201ENST00000397592 279 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AL356968.1-201ENST00000416622 474 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AC012498.1-201ENST00000424037 437 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 RPL7L1P10-201ENST00000427790 463 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 SETP8-201ENST00000435341 628 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 ISCA1P2-201ENST00000438679 421 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AC092427.1-201ENST00000439177 601 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 ARF4P4-201ENST00000439608 520 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 PRSS3P4-201ENST00000453323 162 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 RNU6-420P-201ENST00000458780 107 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 U8.18-201ENST00000459285 133 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 RPL31P60-201ENST00000478450 367 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AC106707.2-201ENST00000484182 374 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AC092902.1-201ENST00000486999 259 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 RPL7P23-201ENST00000493874 747 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AC104629.1-201ENST00000494226 508 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 C1GALT1P2-201ENST00000510813 1104 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 RNU6-352P-201ENST00000516908 107 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 RNU6-56P-201ENST00000516986 93 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 SNORA31.21-201ENST00000517180 77 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AP003355.1-201ENST00000518956 587 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AC087373.1-201ENST00000524920 491 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 HIGD1AP1-201ENST00000550979 275 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AADACP1-206ENST00000561502 1193 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AC138915.2-201ENST00000569776 97 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 RN7SL339P-201ENST00000580597 296 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 MIR4637-201ENST00000582405 84 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AC011458.1-201ENST00000604034 617 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 BNIP3P19-201ENST00000605397 577 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AC069200.1-201ENST00000609511 323 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AC004852.3-201ENST00000614131 326 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 AP000943.4-201ENST00000622912 357 ntBASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.18□□□□□ -1.9
ZNF540Q8NDQ6 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 AP000526.1-201ENST00000603308 1388 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 AC010680.1-201ENST00000590024 3590 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 MIR148B-201ENST00000362252 99 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 MCTS2P-201ENST00000394552 546 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 AL031121.1-201ENST00000406553 254 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 BTF3P8-201ENST00000414577 526 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 AC091286.1-201ENST00000431233 461 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 AC092573.2-201ENST00000434546 243 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 THAP5P1-201ENST00000439089 262 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 Z96811.1-201ENST00000445880 108 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 AC234775.1-201ENST00000454247 670 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 GMPSP1-201ENST00000514075 579 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 SCARNA14-201ENST00000516903 136 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 OR5G4P-201ENST00000525251 760 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms