Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC008687.2-201ENST00000597865 520 ntBASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 AC024220.1-201ENST00000603675 484 ntBASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 AC011468.4-201ENST00000603942 409 ntBASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 AL132765.2-201ENST00000610812 351 ntBASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 RMST_3.1-201ENST00000611651 109 ntBASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 ERCC6-202ENST00000374127 1782 ntBASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 AL592182.3-201ENST00000642132 3304 ntBASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
USHBP1Q8N6Y0 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AP002907.1-201ENST00000606361 1430 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 SYF2-202ENST00000354361 926 ntTSL 2 BASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 RNU6-451P-201ENST00000362921 107 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 Y_RNA.326-201ENST00000365176 113 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 RNU1-39P-201ENST00000383897 165 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 RPL23AP32-201ENST00000395315 459 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 OR9R1P-201ENST00000412200 877 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AL354751.2-201ENST00000415471 210 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 GNG5P5-201ENST00000420444 220 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AC006946.1-201ENST00000429106 328 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AC018644.1-201ENST00000429934 551 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AC007389.2-201ENST00000434630 306 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AL136380.1-201ENST00000447970 162 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AC140076.1-201ENST00000449897 361 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 RNU6-352P-201ENST00000516908 107 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 RNU6-201P-201ENST00000517100 61 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 PHBP17-201ENST00000528576 541 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 YWHAQP7-201ENST00000603536 658 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AP000942.4-201ENST00000604811 241 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AC078899.5-201ENST00000612475 178 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AL121772.2-201ENST00000614331 297 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AC009237.17-201ENST00000618111 748 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 AL160413.1-201ENST00000622780 310 ntBASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
USHBP1Q8N6Y0 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 FRG1BP-201ENST00000278882 761 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 FRG1CP-201ENST00000358464 769 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 Y_RNA.166-201ENST00000363730 102 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 SNORA51.2-201ENST00000364595 132 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 RPL7P25-201ENST00000404151 721 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 RNU6-373P-201ENST00000411247 98 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 TPMTP2-201ENST00000414372 726 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 MRPL50P2-201ENST00000416821 482 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 PDCL2P1-201ENST00000419302 352 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 RPL37P1-201ENST00000432310 284 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 KCTD9P3-201ENST00000434597 1169 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 TAAR7P-201ENST00000436141 242 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 RPL23AP15-201ENST00000450202 459 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 RPL31P50-201ENST00000471002 296 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 AC083798.1-201ENST00000472671 131 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 TMEM251P1-201ENST00000503717 318 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 AC022690.1-201ENST00000526681 550 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 AC078814.3-201ENST00000553036 491 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 AC090312.1-201ENST00000580637 348 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 SNORD39.3-201ENST00000584451 71 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 AL162730.1-201ENST00000605734 292 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 AC010149.2-201ENST00000637608 315 ntBASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USHBP1Q8N6Y0 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.53
USHBP1Q8N6Y0 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.53
USHBP1Q8N6Y0 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
USHBP1Q8N6Y0 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 132.1 ms