Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC107393.1-201ENST00000512403 346 ntBASIC1.9□□□□□ -2.11
CHD9Q3L8U1 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC1.9□□□□□ -2.11
CHD9Q3L8U1 AC091515.1-201ENST00000548110 679 ntBASIC1.9□□□□□ -2.11
CHD9Q3L8U1 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC1.9□□□□□ -2.11
CHD9Q3L8U1 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC1.9□□□□□ -2.11
CHD9Q3L8U1 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC1.9□□□□□ -2.11
CHD9Q3L8U1 MTND5P35-201ENST00000557537 1720 ntBASIC1.89□□□□□ -2.11
CHD9Q3L8U1 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC1.89□□□□□ -2.11
CHD9Q3L8U1 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.89□□□□□ -2.11
CHD9Q3L8U1 AL161670.1-201ENST00000554348 137 ntBASIC1.89□□□□□ -2.11
CHD9Q3L8U1 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
CHD9Q3L8U1 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
CHD9Q3L8U1 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
CHD9Q3L8U1 MTND5P12-201ENST00000502851 1449 ntBASIC1.89□□□□□ -2.11
CHD9Q3L8U1 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC1.89□□□□□ -2.11
CHD9Q3L8U1 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC1.89□□□□□ -2.11
CHD9Q3L8U1 MIR4452-201ENST00000583004 71 ntBASIC1.89□□□□□ -2.11
CHD9Q3L8U1 AC233981.2-201ENST00000611524 1614 ntBASIC1.89□□□□□ -2.11
CHD9Q3L8U1 RNU6-249P-201ENST00000363016 102 ntBASIC1.88□□□□□ -2.11
CHD9Q3L8U1 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC1.88□□□□□ -2.11
CHD9Q3L8U1 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC1.88□□□□□ -2.11
CHD9Q3L8U1 AC004486.1-201ENST00000546846 233 ntBASIC1.88□□□□□ -2.11
CHD9Q3L8U1 AL645939.4-201ENST00000604495 135 ntBASIC1.88□□□□□ -2.11
CHD9Q3L8U1 AL359740.1-201ENST00000624340 592 ntBASIC1.88□□□□□ -2.11
CHD9Q3L8U1 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
CHD9Q3L8U1 MTCO1P7-201ENST00000419523 1542 ntBASIC1.88□□□□□ -2.11
CHD9Q3L8U1 NDUFB4P5-201ENST00000415445 361 ntBASIC1.88□□□□□ -2.11
CHD9Q3L8U1 XIST-201ENST00000416330 750 ntTSL 2 BASIC1.88□□□□□ -2.11
CHD9Q3L8U1 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC1.88□□□□□ -2.11
CHD9Q3L8U1 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC1.88□□□□□ -2.11
CHD9Q3L8U1 RBM12B-AS1-201ENST00000623283 653 ntBASIC1.88□□□□□ -2.11
CHD9Q3L8U1 AL133412.1-201ENST00000380194 2992 ntBASIC1.88□□□□□ -2.11
CHD9Q3L8U1 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
CHD9Q3L8U1 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
CHD9Q3L8U1 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC1.88□□□□□ -2.11
CHD9Q3L8U1 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.88□□□□□ -2.11
CHD9Q3L8U1 Z98749.2-208ENST00000381646 500 ntBASIC1.88□□□□□ -2.11
CHD9Q3L8U1 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC1.88□□□□□ -2.11
CHD9Q3L8U1 TOMM22P6-201ENST00000465035 409 ntBASIC1.88□□□□□ -2.11
CHD9Q3L8U1 AC108734.3-201ENST00000481241 1165 ntBASIC1.88□□□□□ -2.11
CHD9Q3L8U1 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC1.88□□□□□ -2.11
CHD9Q3L8U1 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC1.88□□□□□ -2.11
CHD9Q3L8U1 LRRC77P-213ENST00000637727 880 ntBASIC1.88□□□□□ -2.11
CHD9Q3L8U1 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
CHD9Q3L8U1 AL513331.1-201ENST00000411908 397 ntBASIC1.87□□□□□ -2.11
CHD9Q3L8U1 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC1.87□□□□□ -2.11
CHD9Q3L8U1 AC091544.1-201ENST00000484702 348 ntBASIC1.87□□□□□ -2.11
CHD9Q3L8U1 RN7SKP234-201ENST00000517173 224 ntBASIC1.87□□□□□ -2.11
CHD9Q3L8U1 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC1.87□□□□□ -2.11
CHD9Q3L8U1 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC1.87□□□□□ -2.11
CHD9Q3L8U1 AC010297.1-201ENST00000623948 149 ntBASIC1.87□□□□□ -2.11
CHD9Q3L8U1 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
CHD9Q3L8U1 ZNF720P1-201ENST00000562403 1939 ntBASIC1.87□□□□□ -2.11
CHD9Q3L8U1 RNA5SP325-201ENST00000363756 130 ntBASIC1.87□□□□□ -2.11
CHD9Q3L8U1 Y_RNA.374-201ENST00000365606 101 ntBASIC1.87□□□□□ -2.11
CHD9Q3L8U1 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC1.87□□□□□ -2.11
CHD9Q3L8U1 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
CHD9Q3L8U1 AC093775.1-201ENST00000624154 1868 ntBASIC1.87□□□□□ -2.11
CHD9Q3L8U1 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
CHD9Q3L8U1 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
CHD9Q3L8U1 AL391987.6-201ENST00000305671 199 ntBASIC1.86□□□□□ -2.11
CHD9Q3L8U1 SNORA7.1-201ENST00000363750 139 ntBASIC1.86□□□□□ -2.11
CHD9Q3L8U1 AL138787.1-202ENST00000437804 898 ntBASIC1.86□□□□□ -2.11
CHD9Q3L8U1 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC1.86□□□□□ -2.11
CHD9Q3L8U1 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC1.86□□□□□ -2.11
CHD9Q3L8U1 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC1.86□□□□□ -2.11
CHD9Q3L8U1 AC079804.2-201ENST00000490376 200 ntBASIC1.86□□□□□ -2.11
CHD9Q3L8U1 AF186190.1-201ENST00000517470 480 ntBASIC1.86□□□□□ -2.11
CHD9Q3L8U1 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC1.86□□□□□ -2.11
CHD9Q3L8U1 AC105429.2-201ENST00000610567 517 ntBASIC1.86□□□□□ -2.11
CHD9Q3L8U1 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC1.86□□□□□ -2.11
CHD9Q3L8U1 AC131238.1-201ENST00000617135 328 ntBASIC1.86□□□□□ -2.11
CHD9Q3L8U1 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
CHD9Q3L8U1 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
CHD9Q3L8U1 Y_RNA.354-201ENST00000365448 111 ntBASIC1.86□□□□□ -2.11
CHD9Q3L8U1 USP9YP15-201ENST00000442391 422 ntBASIC1.86□□□□□ -2.11
CHD9Q3L8U1 MIR449C-201ENST00000516047 92 ntBASIC1.86□□□□□ -2.11
CHD9Q3L8U1 AC087441.2-201ENST00000529141 262 ntBASIC1.86□□□□□ -2.11
CHD9Q3L8U1 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC1.85□□□□□ -2.11
CHD9Q3L8U1 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
CHD9Q3L8U1 Y_RNA.191-201ENST00000363972 113 ntBASIC1.85□□□□□ -2.11
CHD9Q3L8U1 USP9YP10-201ENST00000454868 628 ntBASIC1.85□□□□□ -2.11
CHD9Q3L8U1 AMD1P1-201ENST00000457220 922 ntBASIC1.85□□□□□ -2.11
CHD9Q3L8U1 MTCYBP17-201ENST00000503579 789 ntBASIC1.85□□□□□ -2.11
CHD9Q3L8U1 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC1.85□□□□□ -2.11
CHD9Q3L8U1 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC1.85□□□□□ -2.11
CHD9Q3L8U1 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC1.85□□□□□ -2.11
CHD9Q3L8U1 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC1.85□□□□□ -2.11
CHD9Q3L8U1 AC010329.2-201ENST00000595195 2737 ntBASIC1.85□□□□□ -2.11
CHD9Q3L8U1 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC1.85□□□□□ -2.11
CHD9Q3L8U1 MIR96-201ENST00000362288 78 ntBASIC1.85□□□□□ -2.11
CHD9Q3L8U1 POLHP1-201ENST00000411806 470 ntBASIC1.85□□□□□ -2.11
CHD9Q3L8U1 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC1.85□□□□□ -2.11
CHD9Q3L8U1 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC1.85□□□□□ -2.11
CHD9Q3L8U1 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC1.85□□□□□ -2.11
CHD9Q3L8U1 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC1.85□□□□□ -2.11
CHD9Q3L8U1 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.85□□□□□ -2.11
CHD9Q3L8U1 MIR3199-2-201ENST00000636243 86 ntBASIC1.85□□□□□ -2.11
CHD9Q3L8U1 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
CHD9Q3L8U1 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 137.9 ms