Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AL359715.4-201ENST00000606629 1436 ntBASIC2.11□□□□□ -2.07
CHD3Q12873 AC138915.1-201ENST00000565427 1685 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC2.1□□□□□ -2.07
CHD3Q12873 AL513175.2-201ENST00000422071 443 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC2.1□□□□□ -2.07
CHD3Q12873 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC2.1□□□□□ -2.07
CHD3Q12873 VN1R17P-201ENST00000472048 1090 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 RPL23AP45-201ENST00000476406 468 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.1□□□□□ -2.07
CHD3Q12873 MTCO2P32-201ENST00000514865 403 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 SNORD116-30-201ENST00000516468 85 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC2.1□□□□□ -2.07
CHD3Q12873 OR11H5P-201ENST00000554039 926 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC2.1□□□□□ -2.07
CHD3Q12873 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.1□□□□□ -2.07
CHD3Q12873 RPL23AP84-201ENST00000571193 464 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 MIR1273D-201ENST00000577266 86 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.1□□□□□ -2.07
CHD3Q12873 U4.3-201ENST00000621047 82 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.1□□□□□ -2.07
CHD3Q12873 AC080128.1-201ENST00000474389 1917 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
CHD3Q12873 RPL21P132-201ENST00000331267 462 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 RNU6-317P-201ENST00000384031 107 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC2.1□□□□□ -2.07
CHD3Q12873 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.1□□□□□ -2.07
CHD3Q12873 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC2.1□□□□□ -2.07
CHD3Q12873 HMGN1P5-201ENST00000448591 263 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 AC025181.1-201ENST00000477507 416 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 AC026436.1-201ENST00000510537 270 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 SNORD84-203ENST00000584275 78 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 SNRPGP15-201ENST00000600149 222 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 AL109653.1-201ENST00000603091 248 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC2.1□□□□□ -2.07
CHD3Q12873 AP000526.1-201ENST00000603308 1388 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 PABPC1P7-201ENST00000413177 1513 ntBASIC2.1□□□□□ -2.07
CHD3Q12873 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
CHD3Q12873 SNORD114-1-201ENST00000362705 72 ntBASIC2.09□□□□□ -2.07
CHD3Q12873 Y_RNA.238-201ENST00000364441 102 ntBASIC2.09□□□□□ -2.07
CHD3Q12873 SNORA41-201ENST00000384675 132 ntBASIC2.09□□□□□ -2.07
CHD3Q12873 MTCYBP7-201ENST00000419540 1134 ntBASIC2.09□□□□□ -2.07
CHD3Q12873 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC2.09□□□□□ -2.07
CHD3Q12873 MTCYBP12-201ENST00000440559 1134 ntBASIC2.09□□□□□ -2.07
CHD3Q12873 OR51B8P-201ENST00000449892 769 ntBASIC2.09□□□□□ -2.07
CHD3Q12873 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC2.09□□□□□ -2.07
CHD3Q12873 TPMTP4-201ENST00000450749 678 ntBASIC2.09□□□□□ -2.07
CHD3Q12873 HMGN2P16-201ENST00000456802 261 ntBASIC2.09□□□□□ -2.07
CHD3Q12873 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.09□□□□□ -2.07
CHD3Q12873 AC068587.2-201ENST00000478386 781 ntBASIC2.09□□□□□ -2.07
CHD3Q12873 AC009901.1-201ENST00000506703 541 ntBASIC2.09□□□□□ -2.07
CHD3Q12873 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
CHD3Q12873 AC107222.1-201ENST00000510899 637 ntBASIC2.09□□□□□ -2.07
CHD3Q12873 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC2.09□□□□□ -2.07
CHD3Q12873 AC108120.2-201ENST00000512973 294 ntBASIC2.09□□□□□ -2.07
CHD3Q12873 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC2.09□□□□□ -2.07
CHD3Q12873 OR4U1P-201ENST00000554958 912 ntBASIC2.09□□□□□ -2.07
CHD3Q12873 CKS1BP1-201ENST00000555221 240 ntBASIC2.09□□□□□ -2.07
CHD3Q12873 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC2.09□□□□□ -2.07
CHD3Q12873 FAM60CP-201ENST00000591086 664 ntBASIC2.09□□□□□ -2.07
CHD3Q12873 AC020895.1-201ENST00000595362 272 ntBASIC2.09□□□□□ -2.07
CHD3Q12873 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC2.09□□□□□ -2.07
CHD3Q12873 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.07
CHD3Q12873 AC092159.4-201ENST00000624944 550 ntBASIC2.09□□□□□ -2.07
CHD3Q12873 AC096656.1-201ENST00000623826 1364 ntBASIC2.09□□□□□ -2.07
CHD3Q12873 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
CHD3Q12873 Z82209.1-201ENST00000422141 2135 ntBASIC2.09□□□□□ -2.08
CHD3Q12873 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.08□□□□□ -2.08
CHD3Q12873 RNA5SP393-201ENST00000363423 117 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
CHD3Q12873 BTBD10P2-201ENST00000404779 676 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 Y_RNA.595-201ENST00000410403 105 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC2.08□□□□□ -2.08
CHD3Q12873 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.08□□□□□ -2.08
CHD3Q12873 RPL17P49-201ENST00000443728 411 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.08□□□□□ -2.08
CHD3Q12873 MTND3P6-201ENST00000485242 339 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 TBCAP3-201ENST00000512475 312 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.08□□□□□ -2.08
CHD3Q12873 ACTR6P1-201ENST00000514311 1104 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC2.08□□□□□ -2.08
CHD3Q12873 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
CHD3Q12873 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.08□□□□□ -2.08
CHD3Q12873 RANP3-201ENST00000530970 276 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 AC025811.1-201ENST00000604312 472 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 AC009220.3-201ENST00000604318 586 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 AC073387.2-201ENST00000604797 784 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 NF1P10-201ENST00000613227 742 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 AP005212.4-201ENST00000614206 710 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.08□□□□□ -2.08
CHD3Q12873 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
CHD3Q12873 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
CHD3Q12873 AC009501.3-201ENST00000605001 1352 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 Y_RNA.140-201ENST00000363474 103 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC2.08□□□□□ -2.08
CHD3Q12873 MIR320B1-201ENST00000390209 79 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 AC096533.1-201ENST00000411645 353 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 RPS26P56-201ENST00000444468 240 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 AC104389.3-201ENST00000445629 235 ntBASIC2.08□□□□□ -2.08
CHD3Q12873 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC2.08□□□□□ -2.08
CHD3Q12873 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms