Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 RPL23AP15-201ENST00000450202 459 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AC233279.1-201ENST00000455300 423 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 U8.18-201ENST00000459285 133 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A3Q01955 TMEM251P1-201ENST00000503717 318 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A3Q01955 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A3Q01955 SULT1C2P1-202ENST00000562418 459 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AC122134.1-201ENST00000565664 1104 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 AC121334.2-201ENST00000605387 271 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 RMST_7.1-201ENST00000621935 268 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.32□□□□□ -1.72
COL4A3Q01955 U6.101-201ENST00000637707 76 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.32□□□□□ -1.72
COL4A3Q01955 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.32□□□□□ -1.72
COL4A3Q01955 VPS35P1-201ENST00000563400 1518 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A3Q01955 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.32□□□□□ -1.72
COL4A3Q01955 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AC092162.3-201ENST00000624511 1624 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.32□□□□□ -1.72
COL4A3Q01955 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A3Q01955 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AL035425.3-201ENST00000564206 4996 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 AC116667.1-201ENST00000604855 2072 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A3Q01955 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC4.32□□□□□ -1.72
COL4A3Q01955 Y_RNA.394-201ENST00000383942 103 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 RNU6-74P-201ENST00000384235 107 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AL078604.1-201ENST00000404609 466 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.32□□□□□ -1.72
COL4A3Q01955 ELOCP4-201ENST00000420090 333 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 AL353678.1-201ENST00000422735 741 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A3Q01955 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC4.32□□□□□ -1.72
COL4A3Q01955 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A3Q01955 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC4.32□□□□□ -1.72
COL4A3Q01955 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.32□□□□□ -1.72
COL4A3Q01955 RNU1-103P-201ENST00000516502 125 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A3Q01955 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A3Q01955 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC4.32□□□□□ -1.72
COL4A3Q01955 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A3Q01955 MIR5685-201ENST00000579080 79 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A3Q01955 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A3Q01955 AC115621.1-201ENST00000604653 858 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 Z84480.1-201ENST00000605131 311 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 BX664608.1-201ENST00000610519 487 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 AL603758.1-201ENST00000618654 241 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AC100810.6-201ENST00000638068 285 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A3Q01955 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A3Q01955 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A3Q01955 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A3Q01955 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A3Q01955 AL049780.3-201ENST00000624612 1583 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A3Q01955 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.31□□□□□ -1.72
COL4A3Q01955 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.31□□□□□ -1.72
COL4A3Q01955 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A3Q01955 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.31□□□□□ -1.72
COL4A3Q01955 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.31□□□□□ -1.72
COL4A3Q01955 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC4.31□□□□□ -1.72
COL4A3Q01955 RN7SKP186-201ENST00000365371 303 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 RNU6-359P-201ENST00000365466 108 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A3Q01955 RNU6-729P-201ENST00000384399 107 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 ENSAP1-201ENST00000392855 326 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 HIST1H2APS3-201ENST00000403259 134 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 MIR1911-201ENST00000410783 80 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 UBE2Q2P12-201ENST00000414573 204 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC4.31□□□□□ -1.72
COL4A3Q01955 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.31□□□□□ -1.72
COL4A3Q01955 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC4.31□□□□□ -1.72
COL4A3Q01955 IFNA20P-201ENST00000436840 528 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 RSU1P2-202ENST00000437884 485 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 RPL23AP46-201ENST00000438548 490 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 AC016691.1-201ENST00000441321 413 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.31□□□□□ -1.72
COL4A3Q01955 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.31□□□□□ -1.72
COL4A3Q01955 RPL36AP13-201ENST00000457490 317 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 RPS15AP17-201ENST00000470598 390 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.31□□□□□ -1.72
COL4A3Q01955 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms