Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.4□□□□□ -2.03
FOXA1P55317 AC004696.1-201ENST00000614345 607 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.4□□□□□ -2.03
FOXA1P55317 CYP3A51P-201ENST00000633513 256 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.03
FOXA1P55317 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
FOXA1P55317 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
FOXA1P55317 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.4□□□□□ -2.03
FOXA1P55317 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
FOXA1P55317 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
FOXA1P55317 AC069528.2-201ENST00000624849 1991 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
FOXA1P55317 MTCO1P6-201ENST00000481192 1384 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
FOXA1P55317 MIR34A-201ENST00000385130 110 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 AL139039.1-201ENST00000401900 692 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 RNU6-77P-201ENST00000410554 91 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 MTCYBP24-201ENST00000420387 1106 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 AL606495.1-201ENST00000422100 813 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.39□□□□□ -2.03
FOXA1P55317 ARL5AP4-201ENST00000430731 512 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC2.39□□□□□ -2.03
FOXA1P55317 AC010881.1-201ENST00000433830 235 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 AC098826.1-201ENST00000433943 471 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 AL929288.2-201ENST00000446368 407 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 AC005002.1-201ENST00000447458 540 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
FOXA1P55317 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.39□□□□□ -2.03
FOXA1P55317 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC2.39□□□□□ -2.03
FOXA1P55317 OR6K1P-201ENST00000456766 971 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 NF1P3-201ENST00000457709 450 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 UBE2DNL-203ENST00000474922 222 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 RPL23AP55-201ENST00000498163 452 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 MTND3P24-201ENST00000506306 329 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 ARL4AP2-201ENST00000507378 601 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 AC098799.2-201ENST00000509466 868 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 RNA5SP320-201ENST00000516263 124 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 AC087272.1-201ENST00000523624 533 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
FOXA1P55317 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC2.39□□□□□ -2.03
FOXA1P55317 AC004217.3-201ENST00000551552 878 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 GTF3AP2-201ENST00000557014 266 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
FOXA1P55317 AC023824.3-201ENST00000569003 562 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 MIR4513-201ENST00000581077 86 ntBASIC2.39□□□□□ -2.03
FOXA1P55317 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC2.39□□□□□ -2.03
FOXA1P55317 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC2.39□□□□□ -2.03
FOXA1P55317 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
FOXA1P55317 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC2.39□□□□□ -2.03
FOXA1P55317 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
FOXA1P55317 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
FOXA1P55317 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.38□□□□□ -2.03
FOXA1P55317 AC025263.3-201ENST00000622965 1396 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.38□□□□□ -2.03
FOXA1P55317 MIR21-201ENST00000362134 72 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 RNVU1-3-201ENST00000364313 161 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 RNU6-335P-201ENST00000364563 113 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 RNU1-101P-201ENST00000391171 127 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 PTGES3P2-201ENST00000407942 482 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC2.38□□□□□ -2.03
FOXA1P55317 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC2.38□□□□□ -2.03
FOXA1P55317 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.38□□□□□ -2.03
FOXA1P55317 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC2.38□□□□□ -2.03
FOXA1P55317 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.38□□□□□ -2.03
FOXA1P55317 AC027673.1-201ENST00000456245 405 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC2.38□□□□□ -2.03
FOXA1P55317 HMGN2P13-201ENST00000476476 274 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
FOXA1P55317 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC2.38□□□□□ -2.03
FOXA1P55317 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC2.38□□□□□ -2.03
FOXA1P55317 RNU6-488P-201ENST00000515918 99 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 HIGD1AP6-201ENST00000521833 279 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 IGJP1-201ENST00000522682 475 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 MTCYBP41-201ENST00000528913 1123 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 CASP1-212ENST00000531166 300 ntTSL 5 BASIC2.38□□□□□ -2.03
FOXA1P55317 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.38□□□□□ -2.03
FOXA1P55317 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC2.38□□□□□ -2.03
FOXA1P55317 RN7SL622P-201ENST00000585292 275 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 ELOCP29-201ENST00000588193 334 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC2.38□□□□□ -2.03
FOXA1P55317 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC2.38□□□□□ -2.03
FOXA1P55317 AL109653.1-201ENST00000603091 248 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 AL645944.1-201ENST00000603857 493 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 RPL23AP88-201ENST00000605759 454 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 MIR8084-201ENST00000614105 89 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
FOXA1P55317 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC2.38□□□□□ -2.03
FOXA1P55317 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC2.38□□□□□ -2.03
FOXA1P55317 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC2.38□□□□□ -2.03
FOXA1P55317 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC2.38□□□□□ -2.03
FOXA1P55317 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
FOXA1P55317 PABPC1P7-201ENST00000413177 1513 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.37□□□□□ -2.03
FOXA1P55317 AL359893.1-201ENST00000447628 1580 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 RNU6-7-201ENST00000364784 107 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 RNU1-51P-201ENST00000365345 176 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 RNU6-8-201ENST00000365467 107 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXA1P55317 SNORD65C-201ENST00000390962 71 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 AL121972.1-201ENST00000402023 252 ntBASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms