Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 DUXAP11-201ENST00000603858 526 ntBASIC3.32□□□□□ -1.88
SOX3P41225 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.32□□□□□ -1.88
SOX3P41225 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.32□□□□□ -1.88
SOX3P41225 AL445264.1-201ENST00000621719 171 ntBASIC3.32□□□□□ -1.88
SOX3P41225 AL732618.1-201ENST00000623251 301 ntBASIC3.32□□□□□ -1.88
SOX3P41225 AL356596.1-201ENST00000624230 379 ntBASIC3.32□□□□□ -1.88
SOX3P41225 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.32□□□□□ -1.88
SOX3P41225 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.32□□□□□ -1.88
SOX3P41225 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SOX3P41225 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.31□□□□□ -1.88
SOX3P41225 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SOX3P41225 OTUD4P1-201ENST00000237841 3067 ntBASIC3.31□□□□□ -1.88
SOX3P41225 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
SOX3P41225 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.31□□□□□ -1.88
SOX3P41225 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
SOX3P41225 AC012321.1-201ENST00000561622 1588 ntBASIC3.31□□□□□ -1.88
SOX3P41225 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.31□□□□□ -1.88
SOX3P41225 AL445523.1-201ENST00000451184 1362 ntBASIC3.31□□□□□ -1.88
SOX3P41225 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.31□□□□□ -1.88
SOX3P41225 RNU6-989P-201ENST00000362756 107 ntBASIC3.31□□□□□ -1.88
SOX3P41225 AP002088.1-201ENST00000382740 395 ntBASIC3.31□□□□□ -1.88
SOX3P41225 SNORD116-2-201ENST00000384274 95 ntBASIC3.31□□□□□ -1.88
SOX3P41225 Y_RNA.493-201ENST00000384422 102 ntBASIC3.31□□□□□ -1.88
SOX3P41225 SNORD116-6-201ENST00000384711 96 ntBASIC3.31□□□□□ -1.88
SOX3P41225 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
SOX3P41225 AL031577.2-201ENST00000404133 280 ntBASIC3.31□□□□□ -1.88
SOX3P41225 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.31□□□□□ -1.88
SOX3P41225 AC093578.1-201ENST00000415219 368 ntBASIC3.31□□□□□ -1.88
SOX3P41225 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.31□□□□□ -1.88
SOX3P41225 AC092832.1-201ENST00000422934 400 ntBASIC3.31□□□□□ -1.88
SOX3P41225 AC007742.1-201ENST00000425789 329 ntBASIC3.31□□□□□ -1.88
SOX3P41225 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.31□□□□□ -1.88
SOX3P41225 AC006989.1-201ENST00000427212 131 ntBASIC3.31□□□□□ -1.88
SOX3P41225 AL451062.2-201ENST00000427515 271 ntBASIC3.31□□□□□ -1.88
SOX3P41225 CYCSP4-201ENST00000429682 331 ntBASIC3.31□□□□□ -1.88
SOX3P41225 AL158071.1-201ENST00000430315 461 ntBASIC3.31□□□□□ -1.88
SOX3P41225 AC073063.1-201ENST00000434352 607 ntBASIC3.31□□□□□ -1.88
SOX3P41225 ELOCP26-201ENST00000436067 329 ntBASIC3.31□□□□□ -1.88
SOX3P41225 UBE2FP3-201ENST00000436366 524 ntBASIC3.31□□□□□ -1.88
SOX3P41225 SNRPEP7-201ENST00000438350 220 ntBASIC3.31□□□□□ -1.88
SOX3P41225 TXNP1-201ENST00000441872 371 ntBASIC3.31□□□□□ -1.88
SOX3P41225 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.31□□□□□ -1.88
SOX3P41225 RPL21P23-201ENST00000446654 460 ntBASIC3.31□□□□□ -1.88
SOX3P41225 MTCO1P27-201ENST00000448269 226 ntBASIC3.31□□□□□ -1.88
SOX3P41225 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SOX3P41225 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.31□□□□□ -1.88
SOX3P41225 RPL23AP14-201ENST00000468281 468 ntBASIC3.31□□□□□ -1.88
SOX3P41225 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.31□□□□□ -1.88
SOX3P41225 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC3.31□□□□□ -1.88
SOX3P41225 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.31□□□□□ -1.88
SOX3P41225 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.31□□□□□ -1.88
SOX3P41225 COX6CP8-201ENST00000522620 226 ntBASIC3.31□□□□□ -1.88
SOX3P41225 OR5B10P-201ENST00000532869 642 ntBASIC3.31□□□□□ -1.88
SOX3P41225 AC011602.1-201ENST00000546484 331 ntBASIC3.31□□□□□ -1.88
SOX3P41225 CCNG2P1-201ENST00000549521 1000 ntBASIC3.31□□□□□ -1.88
SOX3P41225 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.31□□□□□ -1.88
SOX3P41225 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.31□□□□□ -1.88
SOX3P41225 AC006116.10-201ENST00000591836 581 ntBASIC3.31□□□□□ -1.88
SOX3P41225 AC006077.1-201ENST00000604746 343 ntBASIC3.31□□□□□ -1.88
SOX3P41225 U73479.1-201ENST00000618062 168 ntBASIC3.31□□□□□ -1.88
SOX3P41225 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.31□□□□□ -1.88
SOX3P41225 AL357559.1-201ENST00000622228 274 ntBASIC3.31□□□□□ -1.88
SOX3P41225 C2orf27A-204ENST00000623058 969 ntBASIC3.31□□□□□ -1.88
SOX3P41225 AC243312.2-201ENST00000623340 601 ntBASIC3.31□□□□□ -1.88
SOX3P41225 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SOX3P41225 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
SOX3P41225 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
SOX3P41225 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SOX3P41225 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SOX3P41225 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
SOX3P41225 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
SOX3P41225 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
SOX3P41225 AC007656.2-201ENST00000624902 4547 ntBASIC3.3□□□□□ -1.88
SOX3P41225 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
SOX3P41225 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SOX3P41225 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SOX3P41225 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SOX3P41225 RNA5SP235-201ENST00000365411 114 ntBASIC3.3□□□□□ -1.88
SOX3P41225 MIR7-3-201ENST00000384898 110 ntBASIC3.3□□□□□ -1.88
SOX3P41225 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC3.3□□□□□ -1.88
SOX3P41225 AC245052.5-201ENST00000416320 649 ntBASIC3.3□□□□□ -1.88
SOX3P41225 MTATP6P27-201ENST00000416987 621 ntBASIC3.3□□□□□ -1.88
SOX3P41225 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.3□□□□□ -1.88
SOX3P41225 AC068533.1-201ENST00000418542 415 ntBASIC3.3□□□□□ -1.88
SOX3P41225 DBIP2-201ENST00000419076 262 ntBASIC3.3□□□□□ -1.88
SOX3P41225 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.3□□□□□ -1.88
SOX3P41225 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.3□□□□□ -1.88
SOX3P41225 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.3□□□□□ -1.88
SOX3P41225 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.3□□□□□ -1.88
SOX3P41225 AL117351.1-201ENST00000438864 766 ntBASIC3.3□□□□□ -1.88
SOX3P41225 UBE2D3P4-201ENST00000441973 436 ntBASIC3.3□□□□□ -1.88
SOX3P41225 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.3□□□□□ -1.88
SOX3P41225 MTND2P22-201ENST00000444325 1033 ntBASIC3.3□□□□□ -1.88
SOX3P41225 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.3□□□□□ -1.88
SOX3P41225 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC3.3□□□□□ -1.88
SOX3P41225 AC010468.1-201ENST00000461022 817 ntBASIC3.3□□□□□ -1.88
SOX3P41225 RPL7L1P8-201ENST00000469911 741 ntBASIC3.3□□□□□ -1.88
SOX3P41225 AC087312.1-201ENST00000471411 480 ntBASIC3.3□□□□□ -1.88
SOX3P41225 AC110768.1-201ENST00000509222 400 ntBASIC3.3□□□□□ -1.88
SOX3P41225 AC010625.1-201ENST00000511296 403 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms