Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RAD23BP2-201ENST00000416003 1207 ntBASIC3.17□□□□□ -1.9
CUX1P39880 AC135999.1-201ENST00000478962 479 ntBASIC3.17□□□□□ -1.9
CUX1P39880 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC3.17□□□□□ -1.9
CUX1P39880 AC005840.1-201ENST00000498412 377 ntBASIC3.17□□□□□ -1.9
CUX1P39880 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC3.17□□□□□ -1.9
CUX1P39880 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.17□□□□□ -1.9
CUX1P39880 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.17□□□□□ -1.9
CUX1P39880 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC3.17□□□□□ -1.9
CUX1P39880 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CUX1P39880 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CUX1P39880 AL139276.1-201ENST00000311910 1001 ntBASIC3.16□□□□□ -1.9
CUX1P39880 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.16□□□□□ -1.9
CUX1P39880 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.16□□□□□ -1.9
CUX1P39880 RPL23AP76-201ENST00000441860 458 ntBASIC3.16□□□□□ -1.9
CUX1P39880 NAMPTP2-201ENST00000505629 1115 ntBASIC3.16□□□□□ -1.9
CUX1P39880 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.16□□□□□ -1.9
CUX1P39880 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.16□□□□□ -1.9
CUX1P39880 HIGD1AP10-201ENST00000527837 282 ntBASIC3.16□□□□□ -1.9
CUX1P39880 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3.16□□□□□ -1.9
CUX1P39880 AC091046.2-201ENST00000620775 665 ntBASIC3.16□□□□□ -1.9
CUX1P39880 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC3.16□□□□□ -1.9
CUX1P39880 MTND5P23-201ENST00000430812 1655 ntBASIC3.16□□□□□ -1.9
CUX1P39880 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.15□□□□□ -1.9
CUX1P39880 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC3.15□□□□□ -1.9
CUX1P39880 CR769767.1-201ENST00000436337 346 ntBASIC3.15□□□□□ -1.9
CUX1P39880 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.15□□□□□ -1.9
CUX1P39880 RPL23AP7-203ENST00000449021 469 ntBASIC3.15□□□□□ -1.9
CUX1P39880 AC011352.3-201ENST00000505162 593 ntBASIC3.15□□□□□ -1.9
CUX1P39880 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.15□□□□□ -1.9
CUX1P39880 RNA5SP480-201ENST00000516840 109 ntBASIC3.15□□□□□ -1.9
CUX1P39880 RNA5SP402-201ENST00000517148 110 ntBASIC3.15□□□□□ -1.9
CUX1P39880 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.15□□□□□ -1.9
CUX1P39880 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.15□□□□□ -1.9
CUX1P39880 AC010678.1-201ENST00000614118 713 ntBASIC3.15□□□□□ -1.9
CUX1P39880 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.15□□□□□ -1.9
CUX1P39880 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CUX1P39880 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.15□□□□□ -1.91
CUX1P39880 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.15□□□□□ -1.91
CUX1P39880 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CUX1P39880 RNA5SP160-201ENST00000364866 120 ntBASIC3.14□□□□□ -1.91
CUX1P39880 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
CUX1P39880 SNORA51.11-201ENST00000384442 131 ntBASIC3.14□□□□□ -1.91
CUX1P39880 AL021407.1-201ENST00000404531 386 ntBASIC3.14□□□□□ -1.91
CUX1P39880 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.14□□□□□ -1.91
CUX1P39880 RPL23AP62-201ENST00000463396 453 ntBASIC3.14□□□□□ -1.91
CUX1P39880 ATG10-AS1-201ENST00000504846 648 ntBASIC3.14□□□□□ -1.91
CUX1P39880 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC3.14□□□□□ -1.91
CUX1P39880 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.14□□□□□ -1.91
CUX1P39880 AL356280.1-201ENST00000603614 379 ntBASIC3.14□□□□□ -1.91
CUX1P39880 AC026241.1-201ENST00000517873 2142 ntBASIC3.14□□□□□ -1.91
CUX1P39880 NCSTNP1-201ENST00000406229 144 ntBASIC3.14□□□□□ -1.91
CUX1P39880 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC3.14□□□□□ -1.91
CUX1P39880 AC104332.2-201ENST00000429959 156 ntBASIC3.14□□□□□ -1.91
CUX1P39880 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
CUX1P39880 AC027673.1-201ENST00000456245 405 ntBASIC3.14□□□□□ -1.91
CUX1P39880 COX6CP5-201ENST00000527162 228 ntBASIC3.14□□□□□ -1.91
CUX1P39880 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.14□□□□□ -1.91
CUX1P39880 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CUX1P39880 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CUX1P39880 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
CUX1P39880 ZNF720P1-201ENST00000562403 1939 ntBASIC3.13□□□□□ -1.91
CUX1P39880 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
CUX1P39880 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
CUX1P39880 RNU2-20P-201ENST00000410425 191 ntBASIC3.13□□□□□ -1.91
CUX1P39880 USP9YP7-201ENST00000436723 430 ntBASIC3.13□□□□□ -1.91
CUX1P39880 USP9YP32-201ENST00000452432 430 ntBASIC3.13□□□□□ -1.91
CUX1P39880 AP003385.6-201ENST00000531603 374 ntBASIC3.13□□□□□ -1.91
CUX1P39880 RPP40P2-201ENST00000603596 712 ntBASIC3.13□□□□□ -1.91
CUX1P39880 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.13□□□□□ -1.91
CUX1P39880 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.13□□□□□ -1.91
CUX1P39880 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.12□□□□□ -1.91
CUX1P39880 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.12□□□□□ -1.91
CUX1P39880 AL138787.1-202ENST00000437804 898 ntBASIC3.12□□□□□ -1.91
CUX1P39880 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.12□□□□□ -1.91
CUX1P39880 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.12□□□□□ -1.91
CUX1P39880 RNU6ATAC12P-201ENST00000516542 115 ntBASIC3.12□□□□□ -1.91
CUX1P39880 RNA5SP490-201ENST00000517141 136 ntBASIC3.12□□□□□ -1.91
CUX1P39880 OR5D17P-201ENST00000531492 978 ntBASIC3.12□□□□□ -1.91
CUX1P39880 DNAJC19P9-201ENST00000555084 351 ntBASIC3.12□□□□□ -1.91
CUX1P39880 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.12□□□□□ -1.91
CUX1P39880 OR5AQ1P-202ENST00000641257 1534 ntBASIC3.12□□□□□ -1.91
CUX1P39880 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CUX1P39880 RNA5SP181-201ENST00000410246 98 ntBASIC3.11□□□□□ -1.91
CUX1P39880 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.11□□□□□ -1.91
CUX1P39880 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.11□□□□□ -1.91
CUX1P39880 AC055855.1-201ENST00000489563 579 ntBASIC3.11□□□□□ -1.91
CUX1P39880 AC104564.1-201ENST00000493028 407 ntBASIC3.11□□□□□ -1.91
CUX1P39880 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.11□□□□□ -1.91
CUX1P39880 AC067805.1-201ENST00000559344 470 ntBASIC3.11□□□□□ -1.91
CUX1P39880 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC3.11□□□□□ -1.91
CUX1P39880 VIS1.1-201ENST00000610517 203 ntBASIC3.11□□□□□ -1.91
CUX1P39880 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC3.11□□□□□ -1.91
CUX1P39880 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CUX1P39880 HMGB1P31-201ENST00000437242 427 ntBASIC3.1□□□□□ -1.91
CUX1P39880 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.1□□□□□ -1.91
CUX1P39880 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC3.1□□□□□ -1.91
CUX1P39880 CFTRP1-201ENST00000456646 183 ntBASIC3.1□□□□□ -1.91
CUX1P39880 AL163540.1-201ENST00000485382 386 ntBASIC3.1□□□□□ -1.91
CUX1P39880 C1GALT1P1-201ENST00000548895 1089 ntBASIC3.1□□□□□ -1.91
CUX1P39880 RPS3AP23-202ENST00000574601 686 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms