Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RNY3P13-201ENST00000365542 102 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.53□□□□□ -1.84
HOXD3P31249 RNU6-761P-201ENST00000384148 107 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 MIR19A-201ENST00000384878 82 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 MIR1-2-201ENST00000384961 85 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 RNU6ATAC5P-201ENST00000388104 126 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 RPL7P60-201ENST00000397636 735 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD3P31249 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD3P31249 AL592291.1-201ENST00000403830 352 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 AL603766.1-201ENST00000407763 664 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.53□□□□□ -1.84
HOXD3P31249 MTATP6P18-201ENST00000417994 673 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 RPL7AP25-201ENST00000423357 805 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 RPS12P5-201ENST00000423449 371 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 AC005517.2-201ENST00000424673 553 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXD3P31249 GTF2IP20-201ENST00000431663 360 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD3P31249 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXD3P31249 AL138799.3-201ENST00000438968 350 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.53□□□□□ -1.84
HOXD3P31249 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.53□□□□□ -1.84
HOXD3P31249 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXD3P31249 Z95327.1-201ENST00000446082 482 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXD3P31249 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXD3P31249 CYCSP34-201ENST00000458172 304 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 RPL23AP24-201ENST00000458203 385 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 SNORD121B-201ENST00000458838 81 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 SCARNA10-201ENST00000459255 330 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 AC041039.1-201ENST00000485656 536 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXD3P31249 AC079382.1-201ENST00000493346 557 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXD3P31249 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXD3P31249 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXD3P31249 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC3.53□□□□□ -1.84
HOXD3P31249 AC114781.4-201ENST00000513707 639 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.53□□□□□ -1.84
HOXD3P31249 AC114797.1-201ENST00000514003 728 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXD3P31249 RN7SKP21-201ENST00000516503 220 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 SNORA20.3-201ENST00000516880 132 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 RN7SKP234-201ENST00000517173 224 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXD3P31249 AP003034.1-201ENST00000534621 422 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 ADI1P3-201ENST00000549509 470 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 SETP2-201ENST00000553886 926 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 AC068831.4-201ENST00000556118 109 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC3.53□□□□□ -1.84
HOXD3P31249 AL035413.2-201ENST00000604801 525 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 AC008966.2-201ENST00000606157 453 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 AC009994.1-201ENST00000606889 253 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 AP001330.5-201ENST00000607176 411 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 AC091979.2-201ENST00000607514 214 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 AC245517.5-201ENST00000611529 162 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXD3P31249 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXD3P31249 AL359314.1-201ENST00000616913 261 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 AL161637.1-201ENST00000622380 412 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 AC009161.2-201ENST00000624626 138 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 MIR3662-201ENST00000637030 95 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXD3P31249 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
HOXD3P31249 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD3P31249 ARHGAP42P3-201ENST00000443989 2508 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 OR56B2P-202ENST00000641377 2453 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 GHR-213ENST00000622294 4312 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXD3P31249 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC3.53□□□□□ -1.84
HOXD3P31249 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
HOXD3P31249 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD3P31249 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD3P31249 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD3P31249 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD3P31249 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD3P31249 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXD3P31249 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD3P31249 OR1S2-201ENST00000302592 978 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
HOXD3P31249 AC021146.4-201ENST00000309229 279 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXD3P31249 RNU6-877P-201ENST00000383868 107 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 RNU1-39P-201ENST00000383897 165 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 SNORD51-201ENST00000384320 80 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 Y_RNA.573-201ENST00000384763 105 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
HOXD3P31249 RPS4XP8-201ENST00000402039 771 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 RNU4-78P-201ENST00000410940 126 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 RPL36AP10-201ENST00000421785 322 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.52□□□□□ -1.85
HOXD3P31249 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXD3P31249 RPS12P10-201ENST00000427031 377 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 AL606489.2-201ENST00000433886 234 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXD3P31249 TPT1P14-201ENST00000448018 505 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXD3P31249 MTND3P10-201ENST00000450967 341 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXD3P31249 AC007537.2-201ENST00000472093 511 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms