Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC3.04□□□□□ -1.92
SDC1P18827 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.04□□□□□ -1.92
SDC1P18827 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC3.04□□□□□ -1.92
SDC1P18827 MIR3690-201ENST00000580266 75 ntBASIC3.04□□□□□ -1.92
SDC1P18827 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
SDC1P18827 ZNF415P1-201ENST00000582279 1166 ntBASIC3.04□□□□□ -1.92
SDC1P18827 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC3.04□□□□□ -1.92
SDC1P18827 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.04□□□□□ -1.92
SDC1P18827 BNIP3P11-201ENST00000603878 563 ntBASIC3.04□□□□□ -1.92
SDC1P18827 AC055876.5-201ENST00000605667 259 ntBASIC3.04□□□□□ -1.92
SDC1P18827 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.04□□□□□ -1.92
SDC1P18827 AC007349.4-201ENST00000608114 532 ntBASIC3.04□□□□□ -1.92
SDC1P18827 AL590282.1-201ENST00000610379 1136 ntBASIC3.04□□□□□ -1.92
SDC1P18827 AC092106.3-201ENST00000611308 722 ntBASIC3.04□□□□□ -1.92
SDC1P18827 AC068787.1-201ENST00000623908 691 ntBASIC3.04□□□□□ -1.92
SDC1P18827 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.04□□□□□ -1.92
SDC1P18827 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.04□□□□□ -1.92
SDC1P18827 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
SDC1P18827 AP000776.1-201ENST00000530032 1663 ntBASIC3.04□□□□□ -1.92
SDC1P18827 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
SDC1P18827 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.04□□□□□ -1.92
SDC1P18827 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
SDC1P18827 AC021755.1-201ENST00000559747 1447 ntBASIC3.03□□□□□ -1.92
SDC1P18827 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.03□□□□□ -1.92
SDC1P18827 SNORA51.2-201ENST00000364595 132 ntBASIC3.03□□□□□ -1.92
SDC1P18827 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
SDC1P18827 MIR134-201ENST00000385258 73 ntBASIC3.03□□□□□ -1.92
SDC1P18827 HMGB1P17-201ENST00000403495 628 ntBASIC3.03□□□□□ -1.92
SDC1P18827 RPS7P15-201ENST00000415804 584 ntBASIC3.03□□□□□ -1.92
SDC1P18827 OR1AA1P-201ENST00000419597 916 ntBASIC3.03□□□□□ -1.92
SDC1P18827 AL139421.1-201ENST00000423010 169 ntBASIC3.03□□□□□ -1.92
SDC1P18827 RPL21P66-201ENST00000426566 466 ntBASIC3.03□□□□□ -1.92
SDC1P18827 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.03□□□□□ -1.92
SDC1P18827 AL590233.1-201ENST00000430017 456 ntBASIC3.03□□□□□ -1.92
SDC1P18827 VDAC1P3-201ENST00000434069 851 ntBASIC3.03□□□□□ -1.92
SDC1P18827 RPS25P9-201ENST00000435591 252 ntBASIC3.03□□□□□ -1.92
SDC1P18827 AC005019.1-201ENST00000436455 431 ntBASIC3.03□□□□□ -1.92
SDC1P18827 RPS12P18-201ENST00000442381 270 ntBASIC3.03□□□□□ -1.92
SDC1P18827 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
SDC1P18827 SUMO2P2-201ENST00000456482 255 ntBASIC3.03□□□□□ -1.92
SDC1P18827 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.03□□□□□ -1.92
SDC1P18827 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC3.03□□□□□ -1.92
SDC1P18827 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
SDC1P18827 AC006499.5-201ENST00000505037 514 ntBASIC3.03□□□□□ -1.92
SDC1P18827 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC3.03□□□□□ -1.92
SDC1P18827 AC010625.1-201ENST00000511296 403 ntBASIC3.03□□□□□ -1.92
SDC1P18827 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.03□□□□□ -1.92
SDC1P18827 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.03□□□□□ -1.92
SDC1P18827 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
SDC1P18827 MTCO2P15-201ENST00000532655 656 ntBASIC3.03□□□□□ -1.92
SDC1P18827 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.03□□□□□ -1.92
SDC1P18827 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.03□□□□□ -1.92
SDC1P18827 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.03□□□□□ -1.92
SDC1P18827 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.03□□□□□ -1.92
SDC1P18827 AC037471.2-201ENST00000564941 598 ntBASIC3.03□□□□□ -1.92
SDC1P18827 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.03□□□□□ -1.92
SDC1P18827 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.03□□□□□ -1.92
SDC1P18827 AC009220.3-201ENST00000604318 586 ntBASIC3.03□□□□□ -1.92
SDC1P18827 AC010738.1-201ENST00000604970 987 ntBASIC3.03□□□□□ -1.92
SDC1P18827 SNORA51-201ENST00000606420 132 ntBASIC3.03□□□□□ -1.92
SDC1P18827 AC092354.2-201ENST00000607786 514 ntBASIC3.03□□□□□ -1.92
SDC1P18827 AC107294.3-201ENST00000609211 526 ntBASIC3.03□□□□□ -1.92
SDC1P18827 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC3.03□□□□□ -1.92
SDC1P18827 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.03□□□□□ -1.92
SDC1P18827 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.03□□□□□ -1.92
SDC1P18827 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
SDC1P18827 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
SDC1P18827 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
SDC1P18827 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.03□□□□□ -1.93
SDC1P18827 AL390862.1-201ENST00000635467 1469 ntBASIC3.03□□□□□ -1.93
SDC1P18827 AC091152.2-201ENST00000591628 2569 ntBASIC3.03□□□□□ -1.93
SDC1P18827 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.02□□□□□ -1.93
SDC1P18827 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
SDC1P18827 OR5BR1P-201ENST00000524992 1330 ntBASIC3.02□□□□□ -1.93
SDC1P18827 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
SDC1P18827 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SDC1P18827 RNU6-1181P-201ENST00000384191 106 ntBASIC3.02□□□□□ -1.93
SDC1P18827 RNU6-83P-201ENST00000384568 112 ntBASIC3.02□□□□□ -1.93
SDC1P18827 SNORA46-201ENST00000384762 135 ntBASIC3.02□□□□□ -1.93
SDC1P18827 TAF9BP1-201ENST00000396646 746 ntBASIC3.02□□□□□ -1.93
SDC1P18827 MIR1284-201ENST00000408337 120 ntBASIC3.02□□□□□ -1.93
SDC1P18827 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.02□□□□□ -1.93
SDC1P18827 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.02□□□□□ -1.93
SDC1P18827 AC019178.2-201ENST00000423595 505 ntBASIC3.02□□□□□ -1.93
SDC1P18827 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.02□□□□□ -1.93
SDC1P18827 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.02□□□□□ -1.93
SDC1P18827 AC007742.1-201ENST00000425789 329 ntBASIC3.02□□□□□ -1.93
SDC1P18827 OR2AS1P-201ENST00000427827 319 ntBASIC3.02□□□□□ -1.93
SDC1P18827 AC079780.1-201ENST00000428259 207 ntBASIC3.02□□□□□ -1.93
SDC1P18827 EZH2P1-201ENST00000431167 291 ntBASIC3.02□□□□□ -1.93
SDC1P18827 MTND4LP10-201ENST00000435146 291 ntBASIC3.02□□□□□ -1.93
SDC1P18827 ELOCP26-201ENST00000436067 329 ntBASIC3.02□□□□□ -1.93
SDC1P18827 SETP5-201ENST00000437270 562 ntBASIC3.02□□□□□ -1.93
SDC1P18827 Z95327.1-201ENST00000446082 482 ntBASIC3.02□□□□□ -1.93
SDC1P18827 PDSS1P2-201ENST00000449397 678 ntBASIC3.02□□□□□ -1.93
SDC1P18827 VN1R17P-201ENST00000472048 1090 ntBASIC3.02□□□□□ -1.93
SDC1P18827 AC108729.1-201ENST00000487812 947 ntBASIC3.02□□□□□ -1.93
SDC1P18827 AC023424.2-201ENST00000493479 777 ntBASIC3.02□□□□□ -1.93
SDC1P18827 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.02□□□□□ -1.93
SDC1P18827 AC104090.1-201ENST00000506341 1171 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms