Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MTND2P2-201ENST00000434633 945 ntBASIC2.02□□□□□ -2.09
HMGA1P17096 AL157827.1-201ENST00000447622 132 ntBASIC2.02□□□□□ -2.09
HMGA1P17096 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC2.02□□□□□ -2.09
HMGA1P17096 RNU6-56P-201ENST00000516986 93 ntBASIC2.02□□□□□ -2.09
HMGA1P17096 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.02□□□□□ -2.09
HMGA1P17096 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.02□□□□□ -2.09
HMGA1P17096 MIR4474-201ENST00000579189 78 ntBASIC2.02□□□□□ -2.09
HMGA1P17096 AC093673.2-201ENST00000609674 331 ntBASIC2.02□□□□□ -2.09
HMGA1P17096 RBM12B-AS1-201ENST00000623283 653 ntBASIC2.02□□□□□ -2.09
HMGA1P17096 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.02□□□□□ -2.09
HMGA1P17096 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.02□□□□□ -2.09
HMGA1P17096 AL353746.1-201ENST00000566293 6881 ntBASIC2.01□□□□□ -2.09
HMGA1P17096 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
HMGA1P17096 MTCO1P6-201ENST00000481192 1384 ntBASIC2.01□□□□□ -2.09
HMGA1P17096 AC010680.1-201ENST00000590024 3590 ntBASIC2.01□□□□□ -2.09
HMGA1P17096 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC2.01□□□□□ -2.09
HMGA1P17096 RNU6-482P-201ENST00000391068 107 ntBASIC2.01□□□□□ -2.09
HMGA1P17096 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC2.01□□□□□ -2.09
HMGA1P17096 AC008173.1-201ENST00000418901 264 ntBASIC2.01□□□□□ -2.09
HMGA1P17096 RPL23AP7-203ENST00000449021 469 ntBASIC2.01□□□□□ -2.09
HMGA1P17096 AL021397.1-201ENST00000451806 248 ntBASIC2.01□□□□□ -2.09
HMGA1P17096 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.01□□□□□ -2.09
HMGA1P17096 AC025033.1-201ENST00000463883 194 ntBASIC2.01□□□□□ -2.09
HMGA1P17096 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC2.01□□□□□ -2.09
HMGA1P17096 HAUS1P1-201ENST00000505275 832 ntBASIC2.01□□□□□ -2.09
HMGA1P17096 MTCYBP37-201ENST00000510642 1133 ntBASIC2.01□□□□□ -2.09
HMGA1P17096 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.01□□□□□ -2.09
HMGA1P17096 RNU6-991P-201ENST00000516168 107 ntBASIC2.01□□□□□ -2.09
HMGA1P17096 RNU6-548P-201ENST00000517083 115 ntBASIC2.01□□□□□ -2.09
HMGA1P17096 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.01□□□□□ -2.09
HMGA1P17096 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC2.01□□□□□ -2.09
HMGA1P17096 AC009314.1-201ENST00000603871 304 ntBASIC2.01□□□□□ -2.09
HMGA1P17096 VIS1.1-201ENST00000610517 203 ntBASIC2.01□□□□□ -2.09
HMGA1P17096 AC092184.1-201ENST00000625042 715 ntBASIC2.01□□□□□ -2.09
HMGA1P17096 AC022336.2-201ENST00000568966 2538 ntBASIC2.01□□□□□ -2.09
HMGA1P17096 MTND5P28-201ENST00000438005 1594 ntBASIC2.01□□□□□ -2.09
HMGA1P17096 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
HMGA1P17096 AC002546.1-201ENST00000588041 2504 ntBASIC2□□□□□ -2.09
HMGA1P17096 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2□□□□□ -2.09
HMGA1P17096 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2□□□□□ -2.09
HMGA1P17096 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2□□□□□ -2.09
HMGA1P17096 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC2□□□□□ -2.09
HMGA1P17096 AC003989.2-201ENST00000440224 169 ntBASIC2□□□□□ -2.09
HMGA1P17096 AC104058.1-201ENST00000448028 297 ntBASIC2□□□□□ -2.09
HMGA1P17096 Y_RNA.638-201ENST00000459374 113 ntBASIC2□□□□□ -2.09
HMGA1P17096 FAM92A1P2-202ENST00000504766 877 ntBASIC2□□□□□ -2.09
HMGA1P17096 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2□□□□□ -2.09
HMGA1P17096 HMGB1P1-201ENST00000522557 636 ntBASIC2□□□□□ -2.09
HMGA1P17096 COX6CP5-201ENST00000527162 228 ntBASIC2□□□□□ -2.09
HMGA1P17096 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC2□□□□□ -2.09
HMGA1P17096 SETP2-201ENST00000553886 926 ntBASIC2□□□□□ -2.09
HMGA1P17096 OR4K7P-201ENST00000580232 945 ntBASIC2□□□□□ -2.09
HMGA1P17096 BNIP3P10-201ENST00000605360 577 ntBASIC2□□□□□ -2.09
HMGA1P17096 AC018754.1-201ENST00000607486 925 ntBASIC2□□□□□ -2.09
HMGA1P17096 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC2□□□□□ -2.09
HMGA1P17096 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2□□□□□ -2.09
HMGA1P17096 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC2□□□□□ -2.09
HMGA1P17096 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
HMGA1P17096 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
HMGA1P17096 AL359893.1-201ENST00000447628 1580 ntBASIC1.99□□□□□ -2.09
HMGA1P17096 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
HMGA1P17096 RPL23AP47-201ENST00000408017 460 ntBASIC1.99□□□□□ -2.09
HMGA1P17096 AL445685.2-201ENST00000422551 342 ntBASIC1.99□□□□□ -2.09
HMGA1P17096 AC109583.1-201ENST00000432156 268 ntBASIC1.99□□□□□ -2.09
HMGA1P17096 RPL7P54-201ENST00000438336 674 ntBASIC1.99□□□□□ -2.09
HMGA1P17096 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC1.99□□□□□ -2.09
HMGA1P17096 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC1.99□□□□□ -2.09
HMGA1P17096 AC007182.2-201ENST00000489251 402 ntBASIC1.99□□□□□ -2.09
HMGA1P17096 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC1.99□□□□□ -2.09
HMGA1P17096 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC1.99□□□□□ -2.09
HMGA1P17096 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC1.99□□□□□ -2.09
HMGA1P17096 PSMA6P4-201ENST00000603247 718 ntBASIC1.99□□□□□ -2.09
HMGA1P17096 AC010200.2-201ENST00000605098 235 ntBASIC1.99□□□□□ -2.09
HMGA1P17096 AL353997.5-201ENST00000618886 171 ntBASIC1.99□□□□□ -2.09
HMGA1P17096 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
HMGA1P17096 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
HMGA1P17096 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
HMGA1P17096 SNORA31-201ENST00000362607 130 ntBASIC1.98□□□□□ -2.09
HMGA1P17096 RNA5SP189-201ENST00000364920 115 ntBASIC1.98□□□□□ -2.09
HMGA1P17096 RNU1-101P-201ENST00000391171 127 ntBASIC1.98□□□□□ -2.09
HMGA1P17096 RNU2-20P-201ENST00000410425 191 ntBASIC1.98□□□□□ -2.09
HMGA1P17096 HMGN2P35-201ENST00000412164 270 ntBASIC1.98□□□□□ -2.09
HMGA1P17096 RPS4XP6-201ENST00000477670 797 ntBASIC1.98□□□□□ -2.09
HMGA1P17096 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
HMGA1P17096 AC117522.2-201ENST00000510049 657 ntBASIC1.98□□□□□ -2.09
HMGA1P17096 FABP5P6-201ENST00000510588 409 ntBASIC1.98□□□□□ -2.09
HMGA1P17096 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.98□□□□□ -2.09
HMGA1P17096 SNORA31.15-201ENST00000516771 132 ntBASIC1.98□□□□□ -2.09
HMGA1P17096 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.98□□□□□ -2.09
HMGA1P17096 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
HMGA1P17096 AP001180.3-201ENST00000582221 145 ntBASIC1.98□□□□□ -2.09
HMGA1P17096 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC1.98□□□□□ -2.09
HMGA1P17096 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.98□□□□□ -2.09
HMGA1P17096 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC1.98□□□□□ -2.09
HMGA1P17096 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
HMGA1P17096 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
HMGA1P17096 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
HMGA1P17096 AL136164.4-201ENST00000625013 2135 ntBASIC1.97□□□□□ -2.09
HMGA1P17096 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.97□□□□□ -2.09
HMGA1P17096 CKAP2P1-201ENST00000555477 2049 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 139.5 ms