Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
CCDC61Q9Y6R9 MDM2-232ENST00000544561 213 ntTSL 5 BASIC7.83□□□□□ -1.16
CCDC61Q9Y6R9 AC098826.3-201ENST00000603823 466 ntBASIC7.83□□□□□ -1.16
CCDC61Q9Y6R9 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC7.83□□□□□ -1.16
CCDC61Q9Y6R9 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC7.83□□□□□ -1.16
CCDC61Q9Y6R9 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC7.83□□□□□ -1.16
CCDC61Q9Y6R9 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
CCDC61Q9Y6R9 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
CCDC61Q9Y6R9 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
CCDC61Q9Y6R9 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC7.83□□□□□ -1.16
CCDC61Q9Y6R9 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC7.83□□□□□ -1.16
CCDC61Q9Y6R9 AC092747.4-201ENST00000620519 1861 ntBASIC7.83□□□□□ -1.16
CCDC61Q9Y6R9 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
CCDC61Q9Y6R9 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
CCDC61Q9Y6R9 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC7.83□□□□□ -1.16
CCDC61Q9Y6R9 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC7.83□□□□□ -1.16
CCDC61Q9Y6R9 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 AC107021.2-201ENST00000567714 2095 ntBASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 MIR130A-201ENST00000385274 89 ntBASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 RPL21P75-201ENST00000396599 483 ntBASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 RPL21P28-201ENST00000401418 483 ntBASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 AL590556.1-201ENST00000423231 483 ntBASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 RPL21P11-201ENST00000461458 483 ntBASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 RPL21P39-201ENST00000463605 483 ntBASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 RN7SL51P-201ENST00000468230 285 ntBASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 AL136126.1-201ENST00000473603 402 ntBASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 RPS4XP1-201ENST00000482189 787 ntBASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 AC132942.1-201ENST00000486753 483 ntBASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 AC093591.1-201ENST00000491435 481 ntBASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 RPL21P16-201ENST00000495531 483 ntBASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 AC007998.5-201ENST00000622938 237 ntBASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 MFSD8-239ENST00000641590 2479 ntBASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 CDC27P2-201ENST00000425026 1922 ntBASIC7.82□□□□□ -1.16
CCDC61Q9Y6R9 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 AL117339.4-201ENST00000608335 7063 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 Y_RNA.82-201ENST00000363000 102 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 Y_RNA.92-201ENST00000363043 102 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 Y_RNA.235-201ENST00000364412 102 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 Y_RNA.306-201ENST00000365015 102 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 Y_RNA.308-201ENST00000365043 101 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 Y_RNA.312-201ENST00000365089 102 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 Y_RNA.322-201ENST00000365151 102 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 SNORD116-14-201ENST00000383894 92 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 SNORD116-17-201ENST00000383929 92 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 SNORD116-15-201ENST00000384445 92 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 SNORD116-20-201ENST00000384529 92 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 SNORD116-19-201ENST00000384729 92 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 SNORA40-201ENST00000388090 126 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 RNA5SP494-201ENST00000410653 129 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 RPS17P13-201ENST00000448974 407 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 Y_RNA.650-201ENST00000459002 102 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 RPL37P6-201ENST00000460682 294 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 RNU4-57P-201ENST00000515980 135 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 Y_RNA.777-201ENST00000516982 102 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 IGHVIII-47-1-201ENST00000518187 331 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 CASC22-201ENST00000569713 386 ntTSL 5 BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 Y_RNA.771-201ENST00000598668 102 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 AC012616.1-201ENST00000600294 197 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 AC007566.2-201ENST00000603642 413 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 Y_RNA.789-201ENST00000622480 102 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 AC009948.3-201ENST00000603415 1798 ntBASIC7.81□□□□□ -1.16
CCDC61Q9Y6R9 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC7.81□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms