Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AC027287.1-201ENST00000553115 1453 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 AC100757.1-201ENST00000616872 1835 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 AC239868.2-201ENST00000564237 4527 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 Y_RNA.480-201ENST00000384364 102 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 RNU6-306P-201ENST00000384617 107 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 RNU11-4P-201ENST00000391149 133 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 MIR1286-201ENST00000408112 78 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 RNU6ATAC16P-201ENST00000408591 138 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 AC096664.2-201ENST00000411843 406 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 AC011933.1-201ENST00000413334 321 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 AL133482.1-201ENST00000415988 498 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 CYCSP6-201ENST00000434498 302 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 AC073465.2-201ENST00000440938 498 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 GAPDHP25-201ENST00000447061 1001 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 AC234775.1-201ENST00000454247 670 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 RPL9P32-201ENST00000464118 620 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 AC084198.1-201ENST00000477747 402 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 RPL21P103-201ENST00000479921 488 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 SCARNA21.2-201ENST00000516600 166 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 IGHV3-76-201ENST00000522465 295 ntBASIC5.69□□□□□ -1.5
USP3Q9Y6I4 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP3Q9Y6I4 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 AC233263.6-201ENST00000631132 1963 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 OR56A5-201ENST00000340110 738 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 RNU6-190P-201ENST00000384154 102 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 SNORD127-201ENST00000458892 86 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 RPL37P6-201ENST00000460682 294 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 RN7SL177P-201ENST00000476596 299 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 RPS21P4-201ENST00000487122 248 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 AC011005.2-201ENST00000487324 359 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 RNU6-406P-201ENST00000516470 107 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 RNU6-789P-201ENST00000517105 102 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 AP000889.1-201ENST00000530968 660 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 AP004607.2-201ENST00000533949 322 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 OR1F2P-201ENST00000570470 933 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 AL512605.2-201ENST00000592972 256 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 AP000769.2-201ENST00000602344 396 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 SUMO2P15-201ENST00000604285 278 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 AL031176.1-201ENST00000604554 466 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 AC010632.3-201ENST00000611377 369 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 MIR6130-201ENST00000619419 109 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 AP000756.2-201ENST00000624168 2567 ntBASIC5.68□□□□□ -1.5
USP3Q9Y6I4 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.68□□□□□ -1.5
USP3Q9Y6I4 AC083837.1-201ENST00000565297 2994 ntBASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms