Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 TRMT10BP1-201ENST00000519377 943 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 MTATP6P24-201ENST00000576835 677 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 MIR3158-1-201ENST00000583596 81 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 AC006133.1-201ENST00000617106 264 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 AP000676.4-201ENST00000624659 623 ntBASIC3.84□□□□□ -1.79
VPS28Q9UK41 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS28Q9UK41 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VPS28Q9UK41 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS28Q9UK41 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.8
VPS28Q9UK41 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.84□□□□□ -1.8
VPS28Q9UK41 AC009812.4-201ENST00000569134 1805 ntBASIC3.84□□□□□ -1.8
VPS28Q9UK41 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS28Q9UK41 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS28Q9UK41 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS28Q9UK41 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.83□□□□□ -1.8
VPS28Q9UK41 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS28Q9UK41 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS28Q9UK41 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.83□□□□□ -1.8
VPS28Q9UK41 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS28Q9UK41 RPL21P132-201ENST00000331267 462 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS28Q9UK41 RNU6-723P-201ENST00000383973 107 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
VPS28Q9UK41 AC119751.3-201ENST00000399720 670 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC3.83□□□□□ -1.8
VPS28Q9UK41 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS28Q9UK41 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS28Q9UK41 AC024082.2-201ENST00000434771 238 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC3.83□□□□□ -1.8
VPS28Q9UK41 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS28Q9UK41 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS28Q9UK41 AC098824.1-201ENST00000453565 980 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS28Q9UK41 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.83□□□□□ -1.8
VPS28Q9UK41 RPL30P9-201ENST00000465586 330 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 RPS23P3-201ENST00000470993 430 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 AC017015.1-201ENST00000477387 286 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 AC021382.1-201ENST00000483523 359 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS28Q9UK41 RPL21P129-201ENST00000491732 478 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 AC112673.1-201ENST00000513168 575 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 SNORA67.7-201ENST00000516664 135 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 PAICSP4-201ENST00000517543 1253 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 AC007991.1-201ENST00000522680 631 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS28Q9UK41 AC009101.1-201ENST00000568135 242 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS28Q9UK41 AC024560.3-201ENST00000608482 349 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 AL450489.1-201ENST00000612071 468 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
VPS28Q9UK41 MIR6130-201ENST00000619419 109 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 AC079684.1-201ENST00000621405 437 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS28Q9UK41 ZNF285B-201ENST00000561698 1767 ntBASIC3.83□□□□□ -1.8
VPS28Q9UK41 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.83□□□□□ -1.8
VPS28Q9UK41 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS28Q9UK41 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS28Q9UK41 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS28Q9UK41 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS28Q9UK41 AC104454.1-201ENST00000421341 1401 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 RNU6-253P-201ENST00000384730 105 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 MIR200C-201ENST00000384980 68 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 RNA5SP424-201ENST00000390988 115 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 ATP5F1P3-201ENST00000397213 657 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 RPL21P17-201ENST00000397467 475 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 RPS3AP26-201ENST00000398259 784 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 MTND4P13-201ENST00000402078 1023 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 RPS3AP24-201ENST00000407896 734 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 RN7SKP266-201ENST00000410232 287 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 RAB9AP3-201ENST00000412737 573 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 GOT2P5-201ENST00000433995 546 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 THAP5P1-201ENST00000439089 262 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 RAB9AP1-201ENST00000449393 573 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 UBDP1-202ENST00000457888 382 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 AC108860.1-201ENST00000484521 383 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 TRBV12-2-201ENST00000489763 344 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 AP002812.1-201ENST00000495378 474 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 AC118282.1-201ENST00000506408 765 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 AC034159.1-201ENST00000513885 583 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 AC026801.2-201ENST00000515352 425 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms