Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RPS17P8-201ENST00000434525 335 ntBASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 RPL36AP6-201ENST00000435770 321 ntBASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 H2AFZP5-201ENST00000446960 382 ntBASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AC041039.1-201ENST00000485656 536 ntBASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AC116562.3-201ENST00000506136 177 ntBASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 PCBP2P3-201ENST00000509726 843 ntBASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 RNA5SP401-201ENST00000515920 127 ntBASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 RNA5SP464-201ENST00000516251 108 ntBASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AC100870.1-201ENST00000522035 505 ntBASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AC068587.5-201ENST00000528506 175 ntBASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AC005868.1-201ENST00000536421 331 ntBASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AP001880.2-201ENST00000538233 448 ntBASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 ADI1P3-201ENST00000549509 470 ntBASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AC133555.2-201ENST00000550213 292 ntBASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AC091042.1-201ENST00000579213 173 ntBASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 HMGB2P1-201ENST00000591146 634 ntBASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AC010591.1-201ENST00000603941 649 ntBASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 AC100827.5-201ENST00000615883 426 ntBASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
TRIM39Q9HCM9 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 TLK1P1-201ENST00000456760 2440 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 MTND5P17-201ENST00000418405 1603 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 NACAP2-201ENST00000318548 624 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 Y_RNA.72-201ENST00000362894 103 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 Y_RNA.157-201ENST00000363638 102 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 RN7SKP100-201ENST00000411258 284 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 RPS12P23-201ENST00000419579 400 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 AC006020.1-201ENST00000420179 1854 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 AL138799.3-201ENST00000438968 350 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 USP9YP8-201ENST00000441913 500 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 RNU7-182P-201ENST00000459009 62 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 AC114786.4-201ENST00000508771 728 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 ENPP7P9-201ENST00000514456 627 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 RN7SKP276-201ENST00000516242 268 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 AC126177.3-201ENST00000551839 688 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 MIR5699-201ENST00000578903 90 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 AC012669.1-201ENST00000603209 283 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 AL034351.1-201ENST00000605288 668 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 SNHG22-203ENST00000617833 660 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 AC006504.8-201ENST00000621046 635 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 AC024614.3-201ENST00000637860 256 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 GABPAP-201ENST00000419271 1356 ntBASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
TRIM39Q9HCM9 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 Y_RNA.22-201ENST00000362492 102 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 MIR124-3-201ENST00000384866 87 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 SNORD37.1-201ENST00000390968 65 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 RNU2-43P-201ENST00000410306 190 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 MTND3P23-201ENST00000431980 347 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 AL162389.1-201ENST00000449233 177 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms