Protein–RNA interactions for Protein: Q9GZZ0

HOXD1, Homeobox protein Hox-D1, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD1Q9GZZ0 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 RNU6-730P-201ENST00000383954 104 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 Y_RNA.493-201ENST00000384422 102 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 MT-TC-201ENST00000387405 66 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 MTND4LP20-201ENST00000402379 270 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 U3.39-201ENST00000408569 239 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 OFD1P18Y-201ENST00000420889 959 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AC090960.1-201ENST00000421072 306 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 Z83846.1-201ENST00000446798 265 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 RPS3AP46-201ENST00000448352 682 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 USP9YP34-201ENST00000453983 808 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 RPS4XP2-201ENST00000458402 793 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 RPL7P15-201ENST00000461190 712 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 SYPL1P1-201ENST00000473622 768 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 MTND3P7-201ENST00000474435 343 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AC090453.1-201ENST00000495560 436 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AC023141.12-201ENST00000512399 199 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 RNU6-678P-201ENST00000516832 109 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AC068657.1-201ENST00000520807 306 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AC239860.2-201ENST00000525886 270 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AP004242.1-201ENST00000533701 349 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AC023161.2-201ENST00000551218 780 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 CENPUP2-201ENST00000555897 1186 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AC011260.1-201ENST00000578420 472 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 VN1R92P-201ENST00000598511 928 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 LLPHP1-201ENST00000603571 367 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 Z94722.1-201ENST00000604328 474 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AC121247.2-201ENST00000604776 136 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AL392048.1-201ENST00000613946 534 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AC073968.1-201ENST00000618594 637 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AC091931.1-201ENST00000623488 728 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AC011477.1-204ENST00000623416 1325 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 AL022578.1-201ENST00000439330 1433 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 OR4G11P-202ENST00000642116 1414 ntBASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD1Q9GZZ0 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 MFSD8-233ENST00000641482 4860 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 RNU6-777P-201ENST00000364265 104 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 RNU1-64P-201ENST00000365443 163 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 RNU6-339P-201ENST00000384310 107 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 RNU6-952P-201ENST00000391164 108 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 AC007066.1-201ENST00000392902 381 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 SKINT1L-201ENST00000401057 817 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 AL355379.1-201ENST00000405542 640 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 RNA5SP31-201ENST00000411144 127 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 FNDC3CP-201ENST00000420795 1155 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 GLRXP1-201ENST00000423261 334 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 AP000907.1-201ENST00000428428 510 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 NEK4P1-201ENST00000433383 879 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 RPL23AP22-201ENST00000437556 453 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 AC009969.1-201ENST00000438726 172 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 NOTCH2P1-201ENST00000443481 624 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 RPL29P29-201ENST00000448725 423 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 USP9YP10-201ENST00000454868 628 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 RPL21P103-201ENST00000479921 488 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 OR5H5P-201ENST00000503164 928 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 AC005178.1-201ENST00000508392 440 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 AKIRIN1P1-201ENST00000547384 544 ntBASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.32□□□□□ -1.88
HOXD1Q9GZZ0 MIR3915-201ENST00000578518 97 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms