Protein–RNA interactions for Protein: Q99958

FOXC2, Forkhead box protein C2, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC2Q99958 AP001317.1-201ENST00000531194 960 ntBASIC2.74□□□□□ -1.97
FOXC2Q99958 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXC2Q99958 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXC2Q99958 DUXAP6-201ENST00000553858 601 ntBASIC2.74□□□□□ -1.97
FOXC2Q99958 AL389895.1-201ENST00000554127 252 ntBASIC2.74□□□□□ -1.97
FOXC2Q99958 AC093510.2-201ENST00000562820 896 ntBASIC2.74□□□□□ -1.97
FOXC2Q99958 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXC2Q99958 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXC2Q99958 MIR3908-201ENST00000579798 126 ntBASIC2.74□□□□□ -1.97
FOXC2Q99958 COX6CP3-201ENST00000580869 223 ntBASIC2.74□□□□□ -1.97
FOXC2Q99958 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXC2Q99958 AP001330.4-201ENST00000604350 154 ntBASIC2.74□□□□□ -1.97
FOXC2Q99958 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC2.74□□□□□ -1.97
FOXC2Q99958 AP000943.4-201ENST00000622912 357 ntBASIC2.74□□□□□ -1.97
FOXC2Q99958 AC103798.2-201ENST00000624292 632 ntBASIC2.74□□□□□ -1.97
FOXC2Q99958 AC091925.2-201ENST00000625059 256 ntBASIC2.74□□□□□ -1.97
FOXC2Q99958 AL138960.2-201ENST00000625145 535 ntBASIC2.74□□□□□ -1.97
FOXC2Q99958 SNORA50A-202ENST00000629536 136 ntBASIC2.74□□□□□ -1.97
FOXC2Q99958 AC026634.1-201ENST00000634369 198 ntBASIC2.74□□□□□ -1.97
FOXC2Q99958 AC010149.2-201ENST00000637608 315 ntBASIC2.74□□□□□ -1.97
FOXC2Q99958 MFSD8-245ENST00000641743 948 ntBASIC2.74□□□□□ -1.97
FOXC2Q99958 MAPK10-322ENST00000641485 4530 ntBASIC2.74□□□□□ -1.97
FOXC2Q99958 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
FOXC2Q99958 RNA5SP42-201ENST00000364278 115 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 SNORA71.1-201ENST00000364523 117 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 RNU6-283P-201ENST00000364788 107 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
FOXC2Q99958 RNU6-1257P-201ENST00000384625 110 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
FOXC2Q99958 RNU6-1176P-201ENST00000390955 107 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 AL354719.1-201ENST00000406535 843 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 AL133264.1-201ENST00000407157 562 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 MIR1261-201ENST00000408659 82 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 AC092447.6-201ENST00000414578 210 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXC2Q99958 AC012497.1-201ENST00000429392 575 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 MTND4LP10-201ENST00000435146 291 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 AL121890.1-201ENST00000435457 205 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXC2Q99958 AC000041.1-201ENST00000439655 175 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXC2Q99958 MRPS31P2-201ENST00000451581 518 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXC2Q99958 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXC2Q99958 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXC2Q99958 RPS4XP22-201ENST00000480755 780 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 RPS3AP50-201ENST00000487064 803 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXC2Q99958 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXC2Q99958 PCBP2P3-201ENST00000509726 843 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.73□□□□□ -1.97
FOXC2Q99958 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXC2Q99958 AC112206.4-201ENST00000515142 405 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 RNU6-237P-201ENST00000515985 71 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 RNU6-27P-201ENST00000516146 107 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 RNU6-1095P-201ENST00000516148 108 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 RNU6-711P-201ENST00000517255 106 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 ERHP1-201ENST00000523006 310 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 AC008489.1-201ENST00000524271 483 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXC2Q99958 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXC2Q99958 ZNF971P-201ENST00000562068 1249 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXC2Q99958 FAM60BP-201ENST00000578364 658 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 AC015917.1-201ENST00000579654 510 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXC2Q99958 AC010738.1-201ENST00000604970 987 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXC2Q99958 VN1R7P-201ENST00000619242 903 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 AC080188.3-201ENST00000624842 748 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 AL136360.1-201ENST00000503377 1900 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 AL359693.1-201ENST00000614959 2407 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
FOXC2Q99958 AC110774.1-201ENST00000623567 2018 ntBASIC2.73□□□□□ -1.97
FOXC2Q99958 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXC2Q99958 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
FOXC2Q99958 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
FOXC2Q99958 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.72□□□□□ -1.97
FOXC2Q99958 MIR217-201ENST00000384817 110 ntBASIC2.72□□□□□ -1.97
FOXC2Q99958 AL136116.1-201ENST00000403591 381 ntBASIC2.72□□□□□ -1.97
FOXC2Q99958 AL136133.1-201ENST00000413694 376 ntBASIC2.72□□□□□ -1.97
FOXC2Q99958 Z99755.1-201ENST00000414048 380 ntBASIC2.72□□□□□ -1.97
FOXC2Q99958 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXC2Q99958 HSPE1P1-201ENST00000421494 318 ntBASIC2.72□□□□□ -1.97
FOXC2Q99958 MTCO1P39-201ENST00000426148 480 ntBASIC2.72□□□□□ -1.97
FOXC2Q99958 Z93242.1-201ENST00000427102 353 ntBASIC2.72□□□□□ -1.97
FOXC2Q99958 MTATP6P4-201ENST00000427725 675 ntBASIC2.72□□□□□ -1.97
FOXC2Q99958 RPL21P40-201ENST00000428586 483 ntBASIC2.72□□□□□ -1.97
FOXC2Q99958 AL035407.1-201ENST00000429211 571 ntBASIC2.72□□□□□ -1.97
FOXC2Q99958 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXC2Q99958 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC2.72□□□□□ -1.97
FOXC2Q99958 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXC2Q99958 AL645638.1-201ENST00000440519 361 ntBASIC2.72□□□□□ -1.97
FOXC2Q99958 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
FOXC2Q99958 RN7SL432P-201ENST00000484057 298 ntBASIC2.72□□□□□ -1.97
FOXC2Q99958 KLRA1P-201ENST00000503499 986 ntBASIC2.72□□□□□ -1.97
FOXC2Q99958 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXC2Q99958 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXC2Q99958 MTND4LP22-201ENST00000508209 276 ntBASIC2.72□□□□□ -1.97
FOXC2Q99958 AC010265.1-201ENST00000513509 211 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms