Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 USP9YP22-201ENST00000438971 294 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC3.62□□□□□ -1.83
USP28Q96RU2 AC091564.1-201ENST00000464563 479 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.62□□□□□ -1.83
USP28Q96RU2 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
USP28Q96RU2 HSPE1P23-201ENST00000509838 286 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 MRPS33P3-201ENST00000513456 322 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.62□□□□□ -1.83
USP28Q96RU2 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.62□□□□□ -1.83
USP28Q96RU2 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
USP28Q96RU2 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.62□□□□□ -1.83
USP28Q96RU2 GTF2IP8-201ENST00000560687 584 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.62□□□□□ -1.83
USP28Q96RU2 AL132657.2-201ENST00000564417 358 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 MIR4504-201ENST00000577413 92 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.62□□□□□ -1.83
USP28Q96RU2 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.62□□□□□ -1.83
USP28Q96RU2 AC092354.2-201ENST00000607786 514 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
USP28Q96RU2 AC018816.2-201ENST00000621460 353 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 AC073348.1-201ENST00000623002 331 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 AC116618.1-201ENST00000634617 774 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.62□□□□□ -1.83
USP28Q96RU2 ZNF542P-204ENST00000482727 1305 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 AP000526.1-201ENST00000603308 1388 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
USP28Q96RU2 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
USP28Q96RU2 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
USP28Q96RU2 AC007256.1-201ENST00000392253 2765 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.61□□□□□ -1.83
USP28Q96RU2 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
USP28Q96RU2 SNORD116-8-201ENST00000384365 95 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 RPL21P3-201ENST00000395517 478 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
USP28Q96RU2 DSTNP4-201ENST00000399472 474 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 FABP12P1-201ENST00000401911 322 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 FCF1P2-201ENST00000415284 583 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 LUZP4P1-201ENST00000415420 344 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.61□□□□□ -1.83
USP28Q96RU2 AC009518.2-201ENST00000418056 731 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 BOLA3P4-201ENST00000418151 400 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 OR1AA1P-201ENST00000419597 916 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.61□□□□□ -1.83
USP28Q96RU2 AL593851.1-201ENST00000426171 157 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 RPL36P19-201ENST00000430744 301 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 AL513175.1-201ENST00000431492 780 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 AL159987.2-201ENST00000432754 307 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 AC005019.1-201ENST00000436455 431 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 MTND3P1-201ENST00000441336 220 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 ANKRD26P4-201ENST00000455755 950 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 AC146507.2-201ENST00000460608 476 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 RN7SL75P-201ENST00000461926 281 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 RPS4XP10-201ENST00000465034 731 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 HMGB3P15-201ENST00000507326 574 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.61□□□□□ -1.83
USP28Q96RU2 AC118465.1-201ENST00000513820 1271 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 RNU6-1225P-201ENST00000516336 65 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 AP001207.1-201ENST00000524051 481 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC3.61□□□□□ -1.83
USP28Q96RU2 AP000619.3-201ENST00000535634 1127 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC3.61□□□□□ -1.83
USP28Q96RU2 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.61□□□□□ -1.83
USP28Q96RU2 AC087465.1-201ENST00000560574 245 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.61□□□□□ -1.83
USP28Q96RU2 MTCYBP28-201ENST00000566728 1132 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 AC017100.2-201ENST00000584628 355 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 BNIP3P26-201ENST00000600827 554 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 CKS1BP3-201ENST00000600888 237 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 AC018638.7-201ENST00000605836 1114 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.61□□□□□ -1.83
USP28Q96RU2 AC099778.2-201ENST00000610904 211 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 AC078883.4-201ENST00000623218 367 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC3.61□□□□□ -1.83
USP28Q96RU2 AC068620.4-201ENST00000636730 1182 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.61□□□□□ -1.83
USP28Q96RU2 AL122126.1-201ENST00000546905 1318 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 AC093831.2-201ENST00000624393 3427 ntBASIC3.61□□□□□ -1.83
USP28Q96RU2 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
USP28Q96RU2 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.6□□□□□ -1.83
USP28Q96RU2 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
USP28Q96RU2 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
USP28Q96RU2 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
USP28Q96RU2 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
USP28Q96RU2 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
USP28Q96RU2 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
USP28Q96RU2 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.6□□□□□ -1.83
USP28Q96RU2 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
USP28Q96RU2 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
USP28Q96RU2 RNU6-1243P-201ENST00000364028 107 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
USP28Q96RU2 RNU6-1300P-201ENST00000391046 108 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 PTMAP2-201ENST00000397627 327 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC3.6□□□□□ -1.83
USP28Q96RU2 AL139421.1-201ENST00000423010 169 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
USP28Q96RU2 RPP40P1-201ENST00000426762 456 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 USP9YP11-201ENST00000427537 717 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 AC097713.2-201ENST00000430199 356 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 VDAC1P3-201ENST00000434069 851 ntBASIC3.6□□□□□ -1.83
USP28Q96RU2 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms