Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC119674.1-220ENST00000641502 1048 ntBASIC2.62□□□□□ -1.99
CCDC42Q96M95 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC42Q96M95 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
CCDC42Q96M95 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC42Q96M95 AC090740.1-201ENST00000623193 2262 ntBASIC2.62□□□□□ -1.99
CCDC42Q96M95 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.62□□□□□ -1.99
CCDC42Q96M95 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC42Q96M95 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC42Q96M95 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC42Q96M95 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC42Q96M95 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC2.61□□□□□ -1.99
CCDC42Q96M95 AL139039.1-201ENST00000401900 692 ntBASIC2.61□□□□□ -1.99
CCDC42Q96M95 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC42Q96M95 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC42Q96M95 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.61□□□□□ -1.99
CCDC42Q96M95 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.61□□□□□ -1.99
CCDC42Q96M95 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC42Q96M95 AC087373.1-201ENST00000524920 491 ntBASIC2.61□□□□□ -1.99
CCDC42Q96M95 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC42Q96M95 AC087241.2-201ENST00000535801 324 ntBASIC2.61□□□□□ -1.99
CCDC42Q96M95 AC092470.1-201ENST00000546187 132 ntBASIC2.61□□□□□ -1.99
CCDC42Q96M95 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC2.61□□□□□ -1.99
CCDC42Q96M95 AC061975.8-201ENST00000587058 721 ntBASIC2.61□□□□□ -1.99
CCDC42Q96M95 NUTF2P8-201ENST00000604593 363 ntBASIC2.61□□□□□ -1.99
CCDC42Q96M95 ATP1B3P1-201ENST00000605365 821 ntBASIC2.61□□□□□ -1.99
CCDC42Q96M95 AL138880.2-201ENST00000616214 239 ntBASIC2.61□□□□□ -1.99
CCDC42Q96M95 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC42Q96M95 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC42Q96M95 U6.107-201ENST00000637108 79 ntBASIC2.61□□□□□ -1.99
CCDC42Q96M95 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.61□□□□□ -1.99
CCDC42Q96M95 AC080100.1-201ENST00000624239 5356 ntBASIC2.61□□□□□ -1.99
CCDC42Q96M95 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC42Q96M95 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
CCDC42Q96M95 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC42Q96M95 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC42Q96M95 RNU6-339P-201ENST00000384310 107 ntBASIC2.6□□□□□ -1.99
CCDC42Q96M95 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC42Q96M95 VTA1P1-201ENST00000414044 866 ntBASIC2.6□□□□□ -1.99
CCDC42Q96M95 RPS3AP9-201ENST00000417027 792 ntBASIC2.6□□□□□ -1.99
CCDC42Q96M95 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC42Q96M95 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC42Q96M95 AL606490.8-201ENST00000441624 319 ntBASIC2.6□□□□□ -1.99
CCDC42Q96M95 AC097499.1-201ENST00000444277 208 ntBASIC2.6□□□□□ -1.99
CCDC42Q96M95 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC42Q96M95 AC233982.1-201ENST00000451247 436 ntBASIC2.6□□□□□ -1.99
CCDC42Q96M95 AC234775.1-201ENST00000454247 670 ntBASIC2.6□□□□□ -1.99
CCDC42Q96M95 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC42Q96M95 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC42Q96M95 MTCO3P44-201ENST00000510977 541 ntBASIC2.6□□□□□ -1.99
CCDC42Q96M95 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC42Q96M95 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC42Q96M95 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.6□□□□□ -1.99
CCDC42Q96M95 SNORA31.8-201ENST00000516327 108 ntBASIC2.6□□□□□ -1.99
CCDC42Q96M95 SNORA31.13-201ENST00000516624 135 ntBASIC2.6□□□□□ -1.99
CCDC42Q96M95 RNA5SP82-201ENST00000516707 92 ntBASIC2.6□□□□□ -1.99
CCDC42Q96M95 PTK2-220ENST00000520151 573 ntTSL 4 BASIC2.6□□□□□ -1.99
CCDC42Q96M95 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC42Q96M95 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC42Q96M95 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC42Q96M95 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC42Q96M95 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC42Q96M95 AC020895.1-201ENST00000595362 272 ntBASIC2.6□□□□□ -1.99
CCDC42Q96M95 RPL23AP92-201ENST00000603609 255 ntBASIC2.6□□□□□ -1.99
CCDC42Q96M95 AC128687.1-201ENST00000605304 619 ntBASIC2.6□□□□□ -1.99
CCDC42Q96M95 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC42Q96M95 AC107905.1-201ENST00000616204 426 ntBASIC2.6□□□□□ -1.99
CCDC42Q96M95 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC42Q96M95 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC42Q96M95 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC42Q96M95 AC093536.2-201ENST00000565257 1406 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC42Q96M95 SNORD46.1-201ENST00000364139 104 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 SNORD114-30-201ENST00000364448 72 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 SNORA51.12-201ENST00000384448 134 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 SSXP10-201ENST00000402595 565 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 RNU2-52P-201ENST00000410680 190 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC42Q96M95 ARL5AP4-201ENST00000430731 512 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC2.59□□□□□ -1.99
CCDC42Q96M95 AC004865.1-201ENST00000442276 1003 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 HSFY3P-201ENST00000444242 1191 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.59□□□□□ -1.99
CCDC42Q96M95 AL590664.1-201ENST00000448065 339 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 AL031183.1-201ENST00000457667 207 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 RPL30P14-201ENST00000482744 348 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 AC104057.1-201ENST00000515547 497 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 OR4R1P-201ENST00000529879 463 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 OR4R2P-201ENST00000530815 597 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC42Q96M95 AC093014.1-201ENST00000548926 724 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC2.59□□□□□ -1.99
CCDC42Q96M95 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC2.59□□□□□ -1.99
CCDC42Q96M95 AC009268.1-201ENST00000561352 1203 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 ACTR3BP3-201ENST00000565577 979 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 DPRXP5-201ENST00000604662 539 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 MIR92B-201ENST00000607575 96 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 AC067747.1-201ENST00000608026 250 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 AC245100.7-201ENST00000609678 442 ntBASIC2.59□□□□□ -1.99
CCDC42Q96M95 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms